Detailed information NTG0197955

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: S100333_RS06295
• Genome accession: NZ_CP021892
• Coordinates: 1216663..1217580 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis subsp. subtilis strain SRCM100333
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1211663..1222580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S100333_RS06280 (S100333_01282)	trpS	1212243..1213235 (-)	993	WP_015483084.1	tryptophan--tRNA ligase	-
S100333_RS06285 (S100333_01283)	oppA	1213979..1215616 (+)	1638	WP_014479443.1	oligopeptide ABC transporter substrate-binding protein OppA	-
S100333_RS06290 (S100333_01284)	oppB	1215724..1216659 (+)	936	WP_088272284.1	oligopeptide ABC transporter permease OppB	-
S100333_RS06295 (S100333_01285)	amiD	1216663..1217580 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
S100333_RS06300 (S100333_01286)	oppD	1217585..1218661 (+)	1077	WP_072173823.1	oligopeptide ABC transporter ATP-binding protein OppD	-
S100333_RS06305 (S100333_01287)	oppF	1218663..1219580 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
S100333_RS06310 (S100333_01288)	yjbB	1219688..1220905 (+)	1218	WP_072592593.1	MFS transporter	-
S100333_RS06315 (S100333_01289)	yjbC	1221069..1221647 (+)	579	WP_003224597.1	GNAT family N-acetyltransferase	-
S100333_RS06320 (S100333_01290)	spx	1221828..1222223 (+)	396	WP_014476435.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=197955 S100333_RS06295 WP_003232954.1 1216663..1217580(+) (amiD) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=197955 S100333_RS06295 WP_003232954.1 1216663..1217580(+) (amiD) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364