Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   A4W88_RS08875 Genome accession   NZ_CP017275
Coordinates   1719258..1719818 (-) Length   186 a.a.
NCBI ID   WP_056947508.1    Uniprot ID   A0AAX0VCZ0
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714258..1724818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS08845 (A4W88_08770) rplA 1715488..1716177 (-) 690 WP_004270847.1 50S ribosomal protein L1 -
  A4W88_RS08850 (A4W88_08775) rplK 1716276..1716701 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  A4W88_RS08855 (A4W88_08780) - 1716827..1717690 (-) 864 WP_231953437.1 alpha/beta fold hydrolase -
  A4W88_RS08860 (A4W88_08785) nusG 1718148..1718696 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  A4W88_RS08865 (A4W88_08790) secE 1718794..1718967 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  A4W88_RS08870 (A4W88_08795) rpmG 1718983..1719132 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  A4W88_RS08875 (A4W88_08800) sigH 1719258..1719818 (-) 561 WP_056947508.1 sigma-70 family RNA polymerase sigma factor Regulator
  A4W88_RS08880 (A4W88_08805) - 1719896..1720429 (-) 534 WP_016265667.1 NYN domain-containing protein -
  A4W88_RS08885 (A4W88_08810) rlmB 1720433..1721320 (-) 888 WP_082267809.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A4W88_RS08890 (A4W88_08815) - 1721307..1721714 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  A4W88_RS08895 (A4W88_08820) cysS 1721711..1723117 (-) 1407 WP_056947506.1 cysteine--tRNA ligase -
  A4W88_RS08900 (A4W88_08825) - 1723548..1724660 (-) 1113 WP_011375372.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22089.28 Da        Isoelectric Point: 7.4752

>NTDB_id=197279 A4W88_RS08875 WP_056947508.1 1719258..1719818(-) (sigH) [Latilactobacillus sakei strain TMW 1.1398]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=197279 A4W88_RS08875 WP_056947508.1 1719258..1719818(-) (sigH) [Latilactobacillus sakei strain TMW 1.1398]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.774

100

0.968

Multiple sequence alignment