Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | A4W88_RS02610 | Genome accession | NZ_CP017275 |
| Coordinates | 513767..514462 (+) | Length | 231 a.a. |
| NCBI ID | WP_147658291.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.1398 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 508767..519462
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W88_RS02590 (A4W88_02570) | rny | 508895..510460 (+) | 1566 | WP_076632200.1 | ribonuclease Y | - |
| A4W88_RS02595 (A4W88_02575) | - | 510613..511701 (+) | 1089 | WP_056948881.1 | MraY family glycosyltransferase | - |
| A4W88_RS02600 (A4W88_02580) | - | 511727..512392 (-) | 666 | WP_076632199.1 | YigZ family protein | - |
| A4W88_RS02605 (A4W88_02585) | comFA | 512454..513791 (+) | 1338 | WP_056948838.1 | DEAD/DEAH box helicase | Machinery gene |
| A4W88_RS02610 (A4W88_02590) | comFC | 513767..514462 (+) | 696 | WP_147658291.1 | ComF family protein | Machinery gene |
| A4W88_RS02615 (A4W88_02595) | raiA | 514589..515134 (+) | 546 | WP_056948836.1 | ribosome-associated translation inhibitor RaiA | - |
| A4W88_RS02620 (A4W88_02600) | secA | 515383..517746 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
| A4W88_RS02625 (A4W88_02605) | prfB | 517816..518932 (+) | 1117 | WP_099049013.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 231 a.a. Molecular weight: 26933.39 Da Isoelectric Point: 9.4488
>NTDB_id=197255 A4W88_RS02610 WP_147658291.1 513767..514462(+) (comFC) [Latilactobacillus sakei strain TMW 1.1398]
MAITINCLMCQNVIIEKPSIKQLLQLKPLLKPHICQICLQQFEPISGNQCSDCSRPLLTGILCSDCQHWRQLYPQQHFKN
QALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQARGFNPVQGLFENCFPLMSLLKKR
PTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRARYPQITINAITLAR
MAITINCLMCQNVIIEKPSIKQLLQLKPLLKPHICQICLQQFEPISGNQCSDCSRPLLTGILCSDCQHWRQLYPQQHFKN
QALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQARGFNPVQGLFENCFPLMSLLKKR
PTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRARYPQITINAITLAR
Nucleotide
Download Length: 696 bp
>NTDB_id=197255 A4W88_RS02610 WP_147658291.1 513767..514462(+) (comFC) [Latilactobacillus sakei strain TMW 1.1398]
ATGGCGATTACAATCAACTGTTTAATGTGTCAAAATGTCATTATTGAAAAGCCAAGTATTAAACAACTGCTACAACTAAA
ACCACTACTTAAACCGCATATCTGTCAAATTTGTTTACAGCAGTTTGAACCTATCAGTGGCAACCAGTGTTCGGATTGTA
GTCGGCCACTATTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTACCCCCAACAGCATTTTAAAAAT
CAAGCATTGTTTACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTT
ACTATTTGAACGGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAAC
ATCAACAAGCACGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGA
CCAACGGAAAAGGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAA
GTTACCTGATAAGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAAT
GTCTGCGTGCTCGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG
ATGGCGATTACAATCAACTGTTTAATGTGTCAAAATGTCATTATTGAAAAGCCAAGTATTAAACAACTGCTACAACTAAA
ACCACTACTTAAACCGCATATCTGTCAAATTTGTTTACAGCAGTTTGAACCTATCAGTGGCAACCAGTGTTCGGATTGTA
GTCGGCCACTATTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTACCCCCAACAGCATTTTAAAAAT
CAAGCATTGTTTACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTT
ACTATTTGAACGGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAAC
ATCAACAAGCACGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGA
CCAACGGAAAAGGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAA
GTTACCTGATAAGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAAT
GTCTGCGTGCTCGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
91.549 |
61.472 |
0.563 |