Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CDH88_RS01305 Genome accession   NZ_CP021840
Coordinates   238909..239424 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC974     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 233909..244424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS01280 (CDH88_01280) ygaZ 234308..235045 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CDH88_RS01285 (CDH88_01285) ygaH 235035..235370 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  CDH88_RS01290 (CDH88_01290) emrR 235461..235991 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CDH88_RS01295 (CDH88_01295) emrA 236118..237290 (+) 1173 Protein_243 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CDH88_RS01300 (CDH88_01300) emrB 237307..238845 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CDH88_RS01305 (CDH88_01305) luxS 238909..239424 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CDH88_RS01310 (CDH88_01310) gshA 239574..241130 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CDH88_RS01315 (CDH88_01315) yqaA 241203..241631 (-) 429 WP_088172184.1 YqaA family protein -
  CDH88_RS01320 (CDH88_01320) yqaB 241628..242194 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CDH88_RS01355 (CDH88_01355) csrA 243516..243701 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=196563 CDH88_RS01305 WP_001130211.1 238909..239424(-) (luxS) [Escherichia coli strain EC974]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=196563 CDH88_RS01305 WP_001130211.1 238909..239424(-) (luxS) [Escherichia coli strain EC974]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment