Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BHS01_RS02255 Genome accession   NZ_CP017195
Coordinates   439318..440253 (+) Length   311 a.a.
NCBI ID   WP_109835056.1    Uniprot ID   -
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434318..445253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS02240 (BHS01_02225) - 436567..437154 (+) 588 WP_109835059.1 hypothetical protein -
  BHS01_RS02245 (BHS01_02230) murC 437294..438628 (+) 1335 WP_188347930.1 UDP-N-acetylmuramate--L-alanine ligase -
  BHS01_RS02250 (BHS01_02235) - 438691..439179 (+) 489 WP_109835057.1 GNAT family N-acetyltransferase -
  BHS01_RS02255 (BHS01_02240) comYH 439318..440253 (+) 936 WP_109835056.1 class I SAM-dependent methyltransferase Machinery gene
  BHS01_RS02260 (BHS01_02245) - 440359..441543 (+) 1185 WP_109835055.1 acetate kinase -
  BHS01_RS02265 (BHS01_02250) pyrH 441758..442477 (+) 720 WP_047916063.1 UMP kinase -
  BHS01_RS02270 (BHS01_02255) frr 442593..443150 (+) 558 WP_079507126.1 ribosome recycling factor -
  BHS01_RS02275 (BHS01_02260) - 443361..444224 (+) 864 WP_079507124.1 S1 RNA-binding domain-containing protein -
  BHS01_RS02280 (BHS01_02265) msrA 444221..444742 (+) 522 WP_109835054.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BHS01_RS02285 (BHS01_02270) - 444739..444948 (+) 210 WP_109835053.1 YozE family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34700.91 Da        Isoelectric Point: 4.7302

>NTDB_id=196563 BHS01_RS02255 WP_109835056.1 439318..440253(+) (comYH) [Lactococcus paracarnosus strain TMW 2.1615]
MNMEKIEQAFALLLRNVQLLESQLSTHFYEGLIEQNASYTGKSSLSDLRLIQDDLRALGLTKKEWQKVYQFALVKGAKAM
HLQANHQLTPDAIGYIVNFMVETLYSDKVLSILELGSGTGNLAETLLTGIADKTIAYTGFEVDDLMIDLSASIADVMQTD
AKFLQIDAIRPQVIDPVDLLVSDLPIGYYPDDEVAKRSAVASEDDHTYAHHLLMAQGFKYLKADGYAIFIAPVDLLSSGQ
SDLLKKWLQDYARISAVITLPEDIFTEHHQKAIFVLQKSTQSKAPFVFPLTSLTDPEIVKGFMMQFKANMV

Nucleotide


Download         Length: 936 bp        

>NTDB_id=196563 BHS01_RS02255 WP_109835056.1 439318..440253(+) (comYH) [Lactococcus paracarnosus strain TMW 2.1615]
ATGAACATGGAAAAAATTGAACAGGCATTTGCGCTATTGTTGCGCAATGTCCAACTACTAGAAAGCCAATTATCAACCCA
TTTTTATGAGGGGCTAATTGAACAAAATGCAAGTTACACTGGAAAATCCAGTCTGTCTGACTTACGTCTGATCCAAGATG
ATTTAAGAGCGCTTGGGCTGACGAAAAAAGAGTGGCAAAAAGTGTATCAGTTTGCACTTGTAAAAGGTGCAAAAGCCATG
CATCTACAGGCAAATCACCAATTAACACCTGACGCGATTGGTTACATCGTGAATTTTATGGTTGAAACACTCTATAGCGA
TAAGGTCTTGTCTATTTTAGAACTTGGTTCAGGTACCGGGAATCTAGCTGAAACCTTATTAACAGGGATAGCTGACAAGA
CGATTGCTTATACTGGCTTTGAAGTAGATGATTTGATGATTGACCTCTCTGCTAGTATTGCGGATGTCATGCAAACAGAT
GCTAAATTTTTACAGATTGATGCGATTAGACCGCAAGTGATTGACCCAGTCGACTTACTAGTATCGGATTTACCCATCGG
GTATTATCCTGATGATGAGGTGGCAAAGCGTTCAGCTGTTGCAAGTGAAGATGACCATACCTATGCGCATCACTTGCTAA
TGGCGCAAGGGTTCAAATATCTAAAAGCAGACGGCTATGCTATTTTTATAGCACCAGTCGATTTGCTGTCTAGTGGACAG
TCAGACCTCTTGAAAAAATGGCTTCAGGATTATGCTCGTATCTCTGCAGTCATCACCTTACCTGAGGATATTTTCACTGA
GCACCATCAAAAAGCGATTTTTGTTTTACAGAAATCAACACAAAGTAAGGCGCCTTTTGTCTTTCCGTTGACAAGCTTAA
CGGATCCAGAAATTGTCAAAGGTTTTATGATGCAATTCAAGGCAAATATGGTATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

53.871

99.678

0.537
  comYH Streptococcus mutans UA140

53.871

99.678

0.537

Multiple sequence alignment