Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BHS01_RS01550 Genome accession   NZ_CP017195
Coordinates   282682..283470 (+) Length   262 a.a.
NCBI ID   WP_079504798.1    Uniprot ID   -
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 277682..288470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS01520 (BHS01_01505) rpmH 278637..278771 (+) 135 WP_047914782.1 50S ribosomal protein L34 -
  BHS01_RS01525 (BHS01_01510) - 278912..279832 (+) 921 WP_109833956.1 aldo/keto reductase -
  BHS01_RS01530 (BHS01_01515) - 279968..280234 (+) 267 WP_047914784.1 IreB family regulatory phosphoprotein -
  BHS01_RS01535 (BHS01_01520) ruvX 280234..280656 (+) 423 WP_079504794.1 Holliday junction resolvase RuvX -
  BHS01_RS01540 (BHS01_01525) - 280680..280997 (+) 318 WP_109833957.1 DUF1292 domain-containing protein -
  BHS01_RS01545 (BHS01_01530) - 281156..282577 (+) 1422 WP_109833958.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  BHS01_RS01550 (BHS01_01535) codY 282682..283470 (+) 789 WP_079504798.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BHS01_RS01555 (BHS01_01540) aspS 283744..285507 (+) 1764 WP_109833959.1 aspartate--tRNA ligase -
  BHS01_RS01560 (BHS01_01545) gatC 285578..285871 (+) 294 WP_047914789.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  BHS01_RS01565 (BHS01_01550) gatA 285872..287314 (+) 1443 WP_109833960.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28849.89 Da        Isoelectric Point: 4.6105

>NTDB_id=196560 BHS01_RS01550 WP_079504798.1 282682..283470(+) (codY) [Lactococcus paracarnosus strain TMW 2.1615]
MATLLEKTRKITAILQEGLNNSSEELPYKGLSERLSAVIDCNSVVIDGHGDVLGYAMPYKTNNDRVEAMFDNRQLSTEYV
QVASRTYDTEANLSSDAMLSLYPQEVVKDYPNGKTTVAPIYGSGLRLGTFIIWRNEGEFDEEDLVLVEMATTVIGIQLSN
LQIEKMEESIRKSAAVNMAVSTLSYSEMKAVKAILEELGGEEGRLTASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVVNTGIYEKLEGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=196560 BHS01_RS01550 WP_079504798.1 282682..283470(+) (codY) [Lactococcus paracarnosus strain TMW 2.1615]
ATGGCTACTTTATTAGAAAAAACAAGAAAAATCACAGCGATTTTACAAGAAGGGTTAAATAATTCGAGTGAAGAATTACC
CTATAAAGGTTTATCAGAACGTCTATCAGCAGTGATTGACTGTAACTCTGTCGTTATTGATGGACACGGTGATGTACTTG
GCTATGCAATGCCATATAAGACAAACAACGACCGTGTTGAGGCGATGTTTGATAACCGTCAACTGTCGACTGAATATGTG
CAAGTTGCCTCACGTACTTACGATACTGAAGCAAACCTATCATCAGATGCGATGTTATCATTGTATCCACAAGAAGTCGT
AAAAGACTACCCAAATGGTAAAACAACAGTGGCACCGATTTACGGTAGTGGCTTACGACTAGGAACATTTATCATCTGGC
GCAACGAAGGCGAGTTTGATGAAGAAGATCTTGTCTTGGTAGAGATGGCAACAACGGTTATCGGTATCCAATTATCAAAT
CTACAAATTGAAAAAATGGAAGAAAGTATCCGTAAATCAGCAGCTGTTAACATGGCAGTCAGCACTTTATCTTATTCTGA
AATGAAAGCTGTTAAAGCGATTCTTGAAGAACTTGGTGGAGAAGAAGGCCGTTTGACAGCCTCAGTGATTGCCGATAAAA
TCGGTATTACACGTTCAGTTATCGTCAATGCATTACGTAAACTTGAATCAGCCGGTATTATTGAATCTCGTTCTCTTGGT
ATGAAAGGCACTTATCTAAAAGTTGTCAATACTGGTATCTACGAGAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

68.702

100

0.687
  codY Bacillus subtilis subsp. subtilis str. 168

45.882

97.328

0.447

Multiple sequence alignment