Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BHS00_RS08870 Genome accession   NZ_CP017194
Coordinates   1851801..1852589 (-) Length   262 a.a.
NCBI ID   WP_079504798.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1846801..1857589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS08855 (BHS00_08835) gatA 1847947..1849389 (-) 1443 WP_079504802.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  BHS00_RS08860 (BHS00_08840) gatC 1849390..1849683 (-) 294 WP_047914789.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  BHS00_RS08865 (BHS00_08845) aspS 1849754..1851517 (-) 1764 WP_079504800.1 aspartate--tRNA ligase -
  BHS00_RS08870 (BHS00_08850) codY 1851801..1852589 (-) 789 WP_079504798.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BHS00_RS08875 (BHS00_08855) - 1852694..1854115 (-) 1422 WP_079504796.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  BHS00_RS08880 (BHS00_08860) - 1854272..1854595 (-) 324 WP_047914786.1 DUF1292 domain-containing protein -
  BHS00_RS08885 (BHS00_08865) ruvX 1854619..1855041 (-) 423 WP_079504794.1 Holliday junction resolvase RuvX -
  BHS00_RS08890 (BHS00_08870) - 1855041..1855307 (-) 267 WP_188347877.1 IreB family regulatory phosphoprotein -
  BHS00_RS08895 (BHS00_08875) - 1855444..1856354 (-) 911 Protein_1738 aldo/keto reductase -
  BHS00_RS08900 (BHS00_08880) rpmH 1856495..1856629 (-) 135 WP_047914782.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28849.89 Da        Isoelectric Point: 4.6105

>NTDB_id=196550 BHS00_RS08870 WP_079504798.1 1851801..1852589(-) (codY) [Lactococcus carnosus strain TMW 2.1612]
MATLLEKTRKITAILQEGLNNSSEELPYKGLSERLSAVIDCNSVVIDGHGDVLGYAMPYKTNNDRVEAMFDNRQLSTEYV
QVASRTYDTEANLSSDAMLSLYPQEVVKDYPNGKTTVAPIYGSGLRLGTFIIWRNEGEFDEEDLVLVEMATTVIGIQLSN
LQIEKMEESIRKSAAVNMAVSTLSYSEMKAVKAILEELGGEEGRLTASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVVNTGIYEKLEGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=196550 BHS00_RS08870 WP_079504798.1 1851801..1852589(-) (codY) [Lactococcus carnosus strain TMW 2.1612]
ATGGCTACTTTATTAGAAAAAACAAGAAAAATCACAGCGATTTTACAAGAAGGGTTAAATAATTCAAGTGAAGAATTACC
CTATAAAGGTTTATCAGAACGTCTATCAGCAGTGATTGACTGTAACTCTGTCGTTATTGATGGACACGGTGATGTACTTG
GCTATGCAATGCCATATAAGACAAACAACGACCGTGTTGAGGCGATGTTTGATAACCGTCAACTGTCGACTGAATATGTG
CAAGTTGCCTCACGTACTTACGATACTGAAGCAAACCTATCATCAGATGCGATGTTATCATTGTATCCACAAGAAGTCGT
AAAAGACTACCCAAATGGTAAAACAACAGTGGCACCGATTTACGGTAGTGGCTTACGATTAGGAACATTTATCATCTGGC
GCAACGAAGGCGAGTTTGATGAAGAAGATCTTGTCTTGGTAGAGATGGCAACAACGGTTATCGGTATCCAATTATCAAAT
CTACAAATTGAAAAAATGGAAGAAAGTATCCGTAAATCAGCAGCTGTTAACATGGCAGTCAGTACTTTATCTTATTCTGA
AATGAAAGCTGTTAAAGCGATTCTTGAAGAACTTGGTGGAGAAGAAGGTCGTTTGACAGCTTCAGTGATTGCGGATAAAA
TCGGTATCACACGTTCAGTTATCGTCAATGCATTACGTAAACTTGAATCAGCCGGTATTATTGAATCTCGTTCTCTTGGT
ATGAAAGGCACTTATCTAAAAGTTGTCAATACTGGTATCTACGAGAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

68.702

100

0.687
  codY Bacillus subtilis subsp. subtilis str. 168

45.882

97.328

0.447

Multiple sequence alignment