Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BHS00_RS02105 Genome accession   NZ_CP017194
Coordinates   422522..423457 (+) Length   311 a.a.
NCBI ID   WP_079507130.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417522..428457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS02090 (BHS00_02080) - 419772..420359 (+) 588 WP_079507136.1 hypothetical protein -
  BHS00_RS02095 (BHS00_02085) murC 420498..421832 (+) 1335 WP_079507134.1 UDP-N-acetylmuramate--L-alanine ligase -
  BHS00_RS02100 (BHS00_02090) - 421895..422383 (+) 489 WP_079507132.1 GNAT family N-acetyltransferase -
  BHS00_RS02105 (BHS00_02095) comYH 422522..423457 (+) 936 WP_079507130.1 class I SAM-dependent methyltransferase Machinery gene
  BHS00_RS02110 (BHS00_02100) - 423567..424751 (+) 1185 WP_079507128.1 acetate kinase -
  BHS00_RS02115 (BHS00_02105) pyrH 424969..425688 (+) 720 WP_047916063.1 UMP kinase -
  BHS00_RS02120 (BHS00_02110) frr 425804..426361 (+) 558 WP_079507126.1 ribosome recycling factor -
  BHS00_RS02125 (BHS00_02115) - 426572..427435 (+) 864 WP_079507124.1 S1 RNA-binding domain-containing protein -
  BHS00_RS02130 (BHS00_02120) msrA 427432..427953 (+) 522 WP_079507122.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BHS00_RS02135 (BHS00_02125) - 427950..428159 (+) 210 WP_047916059.1 YozE family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34580.73 Da        Isoelectric Point: 5.0215

>NTDB_id=196532 BHS00_RS02105 WP_079507130.1 422522..423457(+) (comYH) [Lactococcus carnosus strain TMW 2.1612]
MNMEKIEQAFALVLRNVQLLESQLSTHFYEGLIEQNASYTGKSDLSDVRLMQDELRALALTKKEWQKVYQFALVKGAKAM
HLQANHQLTPDAIGYIVNFMVETLYRGSSLSVLELGSGTGNLAETLLTGVSDKTITYTGFEVDDLMIDLSASIADVMQTD
AKFLQIDAIRPQVIDPVDLLVSDLPVGYYPDDEVAKRSAVASEDEHTYAHHLLMAQGFKYLKADSYAIFIAPSDLLSSGQ
SSLLKKWLTNYARIAAVITLPEGIFTEHHQKAIFVLQKSTQGKAPFVFPLTSLTDPEIVKGFMMQFKANMV

Nucleotide


Download         Length: 936 bp        

>NTDB_id=196532 BHS00_RS02105 WP_079507130.1 422522..423457(+) (comYH) [Lactococcus carnosus strain TMW 2.1612]
ATGAACATGGAAAAAATTGAACAGGCATTTGCGCTAGTGTTGCGCAATGTCCAACTATTAGAAAGCCAATTATCAACTCA
TTTTTATGAGGGGTTAATTGAACAAAATGCAAGTTACACTGGGAAATCTGACCTGTCTGATGTAAGGCTGATGCAAGATG
AGTTAAGAGCGCTTGCCTTGACAAAAAAAGAGTGGCAAAAAGTGTATCAGTTTGCACTTGTAAAAGGTGCAAAAGCGATG
CATCTGCAGGCAAATCACCAGTTAACACCGGATGCGATTGGCTATATCGTGAATTTCATGGTTGAAACACTCTATCGCGG
TAGCAGCTTGTCGGTGTTGGAACTTGGCTCTGGTACTGGTAATCTTGCGGAGACCTTATTAACAGGTGTCTCTGACAAGA
CGATTACTTATACCGGATTTGAAGTAGATGATTTAATGATTGACCTCTCGGCCAGTATTGCGGACGTCATGCAAACAGAT
GCTAAATTTTTACAGATTGATGCGATTAGACCGCAAGTGATTGACCCAGTTGATTTACTCGTATCGGATTTACCTGTCGG
TTATTATCCTGATGATGAGGTGGCAAAGCGCTCAGCTGTTGCAAGTGAGGATGAACATACCTATGCGCATCACTTACTAA
TGGCGCAAGGGTTCAAATATCTGAAAGCAGACAGCTATGCCATTTTTATAGCACCGAGTGACTTATTGTCTAGTGGTCAG
TCATCACTACTCAAGAAATGGCTAACAAACTATGCAAGAATCGCTGCAGTCATCACCTTACCAGAAGGTATTTTCACTGA
GCATCATCAAAAAGCGATTTTTGTTTTACAGAAGTCAACTCAAGGTAAGGCGCCTTTTGTCTTTCCATTGACAAGCTTAA
CAGATCCGGAAATTGTCAAAGGTTTTATGATGCAATTCAAAGCAAATATGGTATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

53.226

99.678

0.531
  comYH Streptococcus mutans UA140

53.226

99.678

0.531

Multiple sequence alignment