Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CDL16_RS32210 Genome accession   NZ_CP021775
Coordinates   6639498..6640094 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain Pa58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6634498..6645094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS32190 (CDL16_32185) aroK 6635629..6636147 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CDL16_RS32195 (CDL16_32190) pilQ 6636159..6638303 (-) 2145 WP_003135767.1 type 4a pilus secretin PilQ Machinery gene
  CDL16_RS32200 (CDL16_32195) comL/pilP 6638357..6638881 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CDL16_RS32205 (CDL16_32200) pilO 6638878..6639501 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDL16_RS32210 (CDL16_32205) pilN 6639498..6640094 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CDL16_RS32215 (CDL16_32210) pilM 6640094..6641158 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  CDL16_RS32220 (CDL16_32215) - 6641343..6643814 (+) 2472 WP_003135771.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=196459 CDL16_RS32210 WP_003095839.1 6639498..6640094(-) (pilN) [Pseudomonas aeruginosa strain Pa58]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=196459 CDL16_RS32210 WP_003095839.1 6639498..6640094(-) (pilN) [Pseudomonas aeruginosa strain Pa58]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTAGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369