Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CCZ24_RS01470 Genome accession   NZ_CP021773
Coordinates   285373..286158 (+) Length   261 a.a.
NCBI ID   WP_071659925.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 280373..291158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS01450 (CCZ24_01430) - 280849..281811 (-) 963 WP_000723059.1 asparaginase domain-containing protein -
  CCZ24_RS01455 (CCZ24_01435) - 281880..283262 (+) 1383 WP_000974892.1 HAD-IIB family hydrolase -
  CCZ24_RS01460 (CCZ24_01440) - 283317..283769 (-) 453 WP_000080032.1 universal stress protein -
  CCZ24_RS01465 (CCZ24_01445) - 284036..285247 (+) 1212 WP_000688108.1 pyridoxal phosphate-dependent aminotransferase -
  CCZ24_RS01470 (CCZ24_01450) codY 285373..286158 (+) 786 WP_071659925.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CCZ24_RS01475 (CCZ24_01455) - 286225..286773 (+) 549 WP_000158744.1 isochorismatase family cysteine hydrolase -
  CCZ24_RS01480 (CCZ24_01460) - 286820..287785 (-) 966 WP_000153121.1 3-hydroxyacyl-CoA dehydrogenase -
  CCZ24_RS01485 (CCZ24_01465) - 287953..288603 (+) 651 WP_071659924.1 helix-turn-helix transcriptional regulator -
  CCZ24_RS01490 (CCZ24_01470) - 288614..289444 (+) 831 WP_000390093.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29000.14 Da        Isoelectric Point: 4.4520

>NTDB_id=196188 CCZ24_RS01470 WP_071659925.1 285373..286158(+) (codY) [Streptococcus agalactiae strain B105]
MPNLLEKTRKITSILQRSVDSLDVELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFETKQFPDYYV
KSASRVYDTEANLSVDNDLSIFPVETKENFQDGITTIAPIYGGGMRLGTFIIWRNDKEFSDDDLILVEIASTVVGIQLLN
LQTENLEENIRKQTAVTMAINTLSYSEMKAVAAILGELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=196188 CCZ24_RS01470 WP_071659925.1 285373..286158(+) (codY) [Streptococcus agalactiae strain B105]
ATGCCGAATTTATTAGAAAAAACTAGAAAAATTACATCCATCTTACAGCGTTCCGTAGATAGCTTAGATGTCGAATTACC
ATATAATACAATGGCGGCTCAATTAGCTGATATTATTGACTGTAACGCATGTATTATTAATGGTGGTGGTAACTTACTTG
GCTATGCCATGAAATATAAAACAAACACTGACCGTGTGGAAGAATTTTTTGAAACAAAACAATTCCCAGATTACTATGTT
AAATCTGCTAGTCGTGTTTATGATACAGAAGCTAACTTATCAGTAGATAATGATTTGTCAATTTTCCCAGTTGAGACAAA
GGAAAACTTCCAAGATGGTATTACAACAATCGCTCCAATTTATGGTGGTGGAATGCGCTTGGGAACATTTATTATCTGGC
GTAATGATAAAGAATTTAGCGACGATGATTTGATTTTAGTTGAAATTGCAAGCACCGTTGTTGGTATTCAATTACTTAAC
CTTCAAACAGAAAATCTAGAAGAAAATATTCGTAAACAAACAGCGGTGACAATGGCTATCAACACTTTATCTTATTCAGA
AATGAAAGCTGTAGCTGCTATCTTAGGAGAATTAGATGGACTTGAAGGACGCCTAACGGCATCTGTTATTGCAGACCGTA
TTGGAATTACACGTTCCGTTATTGTAAATGCTCTTCGTAAATTGGAGTCTGCGGGAATCATTGAGAGCCGCTCACTCGGT
ATGAAGGGAACATACCTCAAAGTTATTAACGAAGGTATTTTTGACAAATTAAAAGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.433

100

0.674
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49