Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   CCZ24_RS01220 Genome accession   NZ_CP021773
Coordinates   237069..239489 (-) Length   806 a.a.
NCBI ID   WP_000451609.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232069..244489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS01200 (CCZ24_01180) - 232337..232710 (-) 374 Protein_223 pyridoxamine 5'-phosphate oxidase family protein -
  CCZ24_RS01205 (CCZ24_01185) pflB 232811..235123 (-) 2313 WP_000246708.1 formate C-acetyltransferase -
  CCZ24_RS01210 (CCZ24_01190) dinB 235308..236402 (+) 1095 WP_000904555.1 DNA polymerase IV -
  CCZ24_RS01215 (CCZ24_01195) - 236473..236955 (-) 483 WP_000255475.1 hypothetical protein -
  CCZ24_RS01220 (CCZ24_01200) recD/recD2/recDB 237069..239489 (-) 2421 WP_000451609.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CCZ24_RS01225 (CCZ24_01205) lepB 239618..240211 (-) 594 WP_000657515.1 signal peptidase I -
  CCZ24_RS01230 (CCZ24_01210) rnhC 240227..241120 (-) 894 WP_001092527.1 ribonuclease HIII -
  CCZ24_RS01235 (CCZ24_01215) zapA 241231..241542 (+) 312 WP_000448289.1 cell division protein ZapA -
  CCZ24_RS01240 (CCZ24_01220) - 241545..242087 (+) 543 WP_000949954.1 CvpA family protein -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 91004.40 Da        Isoelectric Point: 4.7227

>NTDB_id=196182 CCZ24_RS01220 WP_000451609.1 237069..239489(-) (recD/recD2/recDB) [Streptococcus agalactiae strain B105]
MEVFFTGTIERIIFENASNFFKILLLEIEDTDSDFDDVEVIITGTMADVIEGEEYTFWGTLTQHPKYGEQLQSVRYERAK
PTSGGLVKYFSSEQFKGIGKKTAQRIVELYGDNTIDKILESPEQLSTISGLSKINREAFIAKLKLNYGTEQVLAKLAEYG
LSNRAAIQIFDHYKEESLEVINENPYQLVEDIQGIGFKIADQLAEQVGIESDSPKRFRAAIIHTLVESSMEQGDTYIEAR
TLLEKTITLLEEARQIELDPSIVAKELTNLIAEDKVQHIGTKIFSNTLFFAEEGIKKNLQRILNQPLDKQLNHKDIDREI
RDIQKSLNIHYDNIQEKAIREALLSKVFILTGGPGTGKTTVINGIIEAYSELHHIDLNKNDIPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSDYQSLDDYLDCSLIIIDEFSMVDTWLANQLFDALDSHTQVIIVGDSDQLPSVGPGQVLADLL
NINALPHVKLEKIFRQSEESTIVTLANQMRQGFLPEDFTAKKADRSYFEASANIIPNMISKIVQSALKSGIEAHEIQILA
PMYRGQAGINNLNLIMQNLLNPLKDNNQFTFNDINFRIGDKVLHLVNDTELNVFNGDIGYITDLIPAKYTESKQDEIYMT
FDGQEVIYQRKEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAITRSKSKLILLGEIGAFDFAVKNEG
AKRNTYLIERFENKQEIANSQKIEDSSIDQKIDNTIINTSIPKTATPIEQTNLSKITYRLTEENYLTIDPMIGINQQDIS
AIFDSK

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=196182 CCZ24_RS01220 WP_000451609.1 237069..239489(-) (recD/recD2/recDB) [Streptococcus agalactiae strain B105]
ATGGAAGTATTTTTTACAGGAACCATTGAACGCATTATATTTGAAAATGCCAGCAATTTTTTTAAAATATTACTTCTGGA
AATCGAAGATACGGATAGCGATTTTGATGATGTAGAAGTAATTATTACTGGTACTATGGCCGACGTTATAGAGGGAGAAG
AATATACTTTTTGGGGAACACTAACCCAACATCCAAAATACGGCGAGCAACTACAAAGTGTACGCTATGAAAGAGCCAAG
CCTACTTCAGGTGGCCTTGTGAAATACTTTTCTAGCGAACAATTTAAAGGAATTGGTAAAAAGACTGCCCAACGCATCGT
AGAACTCTATGGAGATAATACCATTGATAAAATCCTTGAATCCCCTGAACAGTTAAGTACAATCTCAGGACTATCAAAAA
TTAATAGAGAAGCATTCATCGCTAAACTGAAACTCAATTATGGAACAGAGCAAGTTTTAGCTAAACTCGCTGAATATGGG
TTAAGCAATCGTGCTGCTATTCAAATATTTGATCACTATAAAGAAGAATCACTTGAAGTGATAAACGAAAATCCTTATCA
ACTTGTTGAGGATATCCAAGGTATCGGTTTTAAAATAGCTGACCAACTTGCTGAACAAGTCGGTATTGAAAGTGATTCTC
CTAAACGCTTTCGTGCTGCTATTATTCATACTTTAGTTGAGTCTTCTATGGAGCAAGGAGATACCTATATTGAGGCTCGT
ACTCTCTTGGAAAAAACCATTACTCTCCTTGAAGAAGCTCGTCAAATCGAACTAGATCCTTCAATTGTTGCTAAGGAATT
GACAAATTTAATTGCAGAAGATAAAGTTCAACATATTGGAACTAAAATTTTTAGTAATACTCTATTTTTTGCCGAAGAAG
GCATCAAAAAAAACTTACAACGAATACTAAATCAGCCTCTTGATAAACAACTAAATCACAAAGATATTGACCGTGAAATC
AGAGATATTCAAAAATCTTTAAATATCCACTACGATAATATCCAAGAAAAAGCTATTAGAGAAGCTTTACTAAGTAAGGT
ATTTATCTTGACTGGTGGCCCAGGAACAGGTAAAACAACAGTTATAAATGGTATTATTGAAGCCTATTCCGAGTTACATC
ATATTGATTTAAACAAAAATGATATTCCTATTGTACTTGCTGCTCCTACAGGTCGTGCTGCTAGACGCATGAATGAACTT
ACCGGTTTACCGAGTGCTACTATTCATAGGCATTTGGGATTAAACGGAGATAGTGACTATCAAAGTCTAGATGACTATCT
AGATTGTTCCTTAATTATCATTGATGAATTTTCAATGGTTGACACTTGGCTTGCTAATCAATTATTTGACGCTTTGGACT
CGCACACACAAGTTATTATTGTCGGAGATAGTGATCAATTACCGTCTGTAGGTCCAGGACAAGTTCTAGCAGATCTTTTA
AATATAAATGCACTTCCACACGTTAAACTTGAAAAGATTTTTAGACAATCAGAAGAATCAACTATTGTGACTTTAGCTAA
TCAAATGAGACAGGGCTTTTTGCCAGAGGACTTTACAGCTAAAAAAGCCGATCGCTCATACTTTGAAGCATCTGCTAATA
TCATCCCAAATATGATTTCTAAAATTGTTCAATCTGCACTTAAGAGCGGTATTGAAGCTCATGAAATTCAAATTTTAGCT
CCTATGTATCGCGGCCAAGCAGGTATTAATAATCTTAACCTTATCATGCAAAATCTCCTCAATCCATTAAAAGATAATAA
CCAATTTACTTTTAATGATATAAATTTCCGAATAGGAGATAAAGTGTTACATTTAGTCAACGATACAGAGCTTAATGTTT
TTAATGGGGATATTGGTTACATAACGGACCTTATACCAGCCAAATATACTGAGAGCAAGCAAGATGAGATTTATATGACT
TTTGACGGTCAAGAAGTTATCTATCAACGCAAAGAATGGCTTAAAATAACACTAGCCTATGCTATGAGTATTCATAAATC
ACAGGGTTCTGAATTTCAAGTTGTTATTCTGCCAATAACGAGACAGAGTGGTCGAATGTTACAGCGAAACCTTATTTATA
CAGCTATTACGAGATCTAAAAGTAAACTAATACTTTTAGGAGAAATTGGTGCATTTGATTTCGCTGTTAAAAACGAGGGG
GCAAAGCGCAATACTTATCTGATAGAAAGATTTGAAAACAAGCAAGAAATAGCTAATTCTCAAAAAATTGAAGATAGCTC
AATAGATCAAAAGATTGACAACACAATAATTAATACGTCCATTCCAAAAACAGCAACACCAATTGAGCAGACTAATCTTT
CAAAAATAACTTATCGCCTAACTGAAGAAAATTATTTAACAATCGATCCAATGATTGGTATTAATCAACAAGATATAAGT
GCAATTTTTGATAGTAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.658

92.928

0.406

Multiple sequence alignment