Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CDH84_RS04450 Genome accession   NZ_CP021771
Coordinates   868366..870099 (-) Length   577 a.a.
NCBI ID   WP_000647647.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B507     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 863366..875099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH84_RS04420 (CDH84_04375) - 863437..864270 (-) 834 WP_000455163.1 lipoate--protein ligase family protein -
  CDH84_RS04425 (CDH84_04380) coaB 864424..865110 (+) 687 WP_001873490.1 phosphopantothenate--cysteine ligase -
  CDH84_RS04430 (CDH84_04385) coaC 865103..865645 (+) 543 WP_000595814.1 phosphopantothenoylcysteine decarboxylase -
  CDH84_RS04435 (CDH84_04390) - 865691..866263 (+) 573 WP_000728786.1 ECF transporter S component -
  CDH84_RS04440 (CDH84_04395) - 866373..868091 (+) 1719 WP_000222544.1 phospho-sugar mutase -
  CDH84_RS04445 (CDH84_04400) - 868155..868352 (-) 198 WP_000746856.1 hypothetical protein -
  CDH84_RS04450 (CDH84_04405) rcrQ 868366..870099 (-) 1734 WP_000647647.1 ABC transporter ATP-binding protein Regulator
  CDH84_RS04455 (CDH84_04410) - 870100..871818 (-) 1719 WP_000826945.1 ABC transporter ATP-binding protein -
  CDH84_RS04460 (CDH84_04415) - 871830..872432 (-) 603 WP_000472259.1 lysozyme family protein -
  CDH84_RS04465 (CDH84_04420) - 872434..873411 (-) 978 WP_000968655.1 nucleoid-associated protein -
  CDH84_RS04470 (CDH84_04425) glyA 873416..874672 (-) 1257 WP_000575546.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64228.89 Da        Isoelectric Point: 8.2055

>NTDB_id=196013 CDH84_RS04450 WP_000647647.1 868366..870099(-) (rcrQ) [Streptococcus agalactiae strain B507]
MKASHPKKIQKKLVQDLLSKKSLVGMALLGTVVQVCLTVYLPVLIGQAVDVVLSPHSMILLLPIMWKMVAVILANTIIQW
INPLLYNRLIFHYVASLRKAVMEKLNQLPVAYLDKRGIGDLISRVTTDTEQLSNGLLMVFNQFFVGLLTILVTIFSMAKI
DLLMLFLVLFLTPLSLFLARFIAKKSYHLYQNQTASRGRQTQFIEEMVSQESLIQAFSAQEESSDHFRTINQEYANFSQS
AIFYSSTVNPSTRFINSLIYGFLAGIGALRIMSGAFSVGQLITFLNYVNQYTKPFNDISSVLSEMQSALACAERLYSILE
ESSPNITGTEKLDSSTVKGQIDFKNVVFGYNKSKPLLNGINLHIPAGAKVAIVGPTGAGKSTLINLLMRFYEVDGGNILL
DGKPITDYEPSQLRQEIGMVLQETWLKSATIHDNIAYANPKASREEVIEAAKAANADFFIKQLPNGYDTYLEDAGDSLSQ
GQCQLLTIARIFLKLPRILILDEATSSIDTRTEVLVQEAFQMLMKGRTSFIIAHRLSTIQTADIILVMVSGEIVEVGNHS
ELMAQKGIYYQMQNAQK

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=196013 CDH84_RS04450 WP_000647647.1 868366..870099(-) (rcrQ) [Streptococcus agalactiae strain B507]
ATGAAAGCAAGTCATCCTAAAAAGATACAAAAAAAGCTTGTTCAAGATCTTCTTTCTAAAAAAAGCTTAGTAGGAATGGC
ATTATTAGGGACGGTAGTACAAGTTTGCCTCACTGTTTATTTGCCTGTTCTAATTGGACAAGCGGTAGACGTTGTATTAT
CGCCTCATTCTATGATATTATTGTTACCTATAATGTGGAAGATGGTTGCAGTTATTTTAGCAAATACTATTATTCAATGG
ATTAATCCTCTGCTCTATAACCGCTTAATTTTTCATTATGTTGCTTCTTTAAGAAAGGCTGTAATGGAAAAGTTGAATCA
ATTACCTGTAGCTTACCTTGATAAACGTGGCATAGGTGACTTGATTAGTCGTGTGACTACCGATACGGAGCAATTATCAA
ATGGTTTATTAATGGTTTTTAACCAGTTCTTTGTTGGTTTATTAACTATTCTAGTTACTATTTTTAGTATGGCAAAGATT
GATTTATTAATGCTTTTTTTGGTATTATTTCTGACGCCTTTATCACTCTTTCTAGCCCGCTTTATTGCTAAAAAGAGTTA
TCACTTATATCAAAATCAAACGGCATCACGAGGACGACAAACTCAATTCATTGAAGAGATGGTGAGTCAAGAAAGCCTTA
TTCAAGCATTCAGTGCGCAAGAAGAAAGTAGTGATCATTTTAGGACTATTAATCAAGAGTATGCTAACTTTTCTCAATCA
GCAATTTTTTATTCTTCAACTGTCAATCCATCAACCCGATTTATCAATAGTTTGATTTATGGCTTCTTAGCTGGGATTGG
TGCCCTTCGTATTATGTCAGGGGCTTTTAGTGTTGGTCAATTAATCACTTTCTTAAATTATGTCAATCAATATACTAAGC
CATTTAATGACATCTCTTCCGTCCTGTCTGAGATGCAAAGTGCTCTGGCTTGTGCAGAACGCCTTTACTCTATTTTAGAA
GAATCGTCACCAAATATAACAGGGACAGAAAAACTTGATTCATCAACGGTCAAGGGTCAAATCGATTTTAAAAATGTTGT
TTTTGGTTATAATAAATCAAAACCACTATTGAATGGTATTAATTTACACATTCCAGCAGGAGCTAAGGTCGCTATTGTAG
GACCAACAGGTGCTGGGAAGTCTACTTTAATCAATTTATTAATGCGTTTCTATGAAGTTGACGGGGGAAATATCCTTTTA
GATGGTAAGCCTATTACTGATTATGAGCCATCACAATTAAGGCAAGAAATTGGAATGGTATTACAAGAAACGTGGTTAAA
AAGTGCTACGATTCACGATAACATTGCATATGCCAATCCTAAAGCTAGCCGTGAAGAAGTGATAGAGGCTGCAAAAGCAG
CTAATGCAGATTTCTTTATCAAACAATTACCGAATGGATATGATACGTATTTAGAAGATGCTGGAGATTCGCTATCACAG
GGGCAATGTCAGCTATTGACAATTGCTCGTATTTTTCTTAAATTACCTAGAATATTGATATTAGATGAGGCGACATCGTC
TATAGATACTCGTACTGAAGTTCTTGTTCAAGAAGCATTCCAAATGTTGATGAAGGGGAGAACAAGCTTTATTATTGCAC
ATCGCTTATCTACCATTCAAACAGCAGATATTATTTTAGTTATGGTATCTGGTGAAATTGTAGAAGTGGGTAACCACTCT
GAATTAATGGCTCAAAAAGGTATTTATTATCAAATGCAAAATGCACAAAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(25-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.991

97.92

0.362