Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LCW_RS08525 Genome accession   NZ_CP017124
Coordinates   1648401..1648958 (-) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WiKim38     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643401..1653958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCW_RS08500 (LCW_08500) - 1643715..1644347 (+) 633 WP_069468434.1 CPBP family intramembrane glutamic endopeptidase -
  LCW_RS08505 (LCW_08505) - 1644400..1645047 (-) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  LCW_RS08510 (LCW_08510) - 1645243..1647186 (+) 1944 WP_065825915.1 ABC-F family ATP-binding cassette domain-containing protein -
  LCW_RS08515 (LCW_08515) - 1647337..1647696 (-) 360 WP_069468435.1 YccF domain-containing protein -
  LCW_RS08520 (LCW_08520) - 1647803..1648120 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  LCW_RS08525 (LCW_08525) sigH 1648401..1648958 (-) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  LCW_RS08530 (LCW_08530) - 1649034..1649567 (-) 534 WP_069468436.1 NYN domain-containing protein -
  LCW_RS08535 (LCW_08535) rlmB 1649571..1650458 (-) 888 WP_081326616.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LCW_RS08540 (LCW_08540) - 1650445..1650852 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  LCW_RS08545 (LCW_08545) cysS 1650849..1652255 (-) 1407 WP_069468437.1 cysteine--tRNA ligase -
  LCW_RS08550 (LCW_08550) - 1652797..1653909 (-) 1113 WP_039098346.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=195912 LCW_RS08525 WP_039098349.1 1648401..1648958(-) (sigH) [Latilactobacillus curvatus strain WiKim38]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=195912 LCW_RS08525 WP_039098349.1 1648401..1648958(-) (sigH) [Latilactobacillus curvatus strain WiKim38]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTATTTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAACAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment