Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BGL50_RS00885 Genome accession   NZ_CP017098
Coordinates   193451..195370 (+) Length   639 a.a.
NCBI ID   WP_004218470.1    Uniprot ID   -
Organism   Bifidobacterium animalis strain BL3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 188451..200370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGL50_RS00865 (BGL50_00825) - 189354..191672 (-) 2319 Protein_160 ABC transporter permease -
  BGL50_RS08435 - 191669..192482 (-) 814 Protein_161 ABC transporter ATP-binding protein -
  BGL50_RS00880 (BGL50_00835) - 192786..193379 (+) 594 WP_004218469.1 MarR family winged helix-turn-helix transcriptional regulator -
  BGL50_RS00885 (BGL50_00840) rcrP 193451..195370 (+) 1920 WP_004218470.1 ABC transporter ATP-binding protein Regulator
  BGL50_RS00890 (BGL50_00845) rcrQ 195442..197277 (+) 1836 WP_004218471.1 ABC transporter ATP-binding protein Regulator
  BGL50_RS00895 (BGL50_00850) - 197291..198817 (-) 1527 WP_004218472.1 polysaccharide deacetylase family protein -
  BGL50_RS00900 (BGL50_00855) - 199192..199881 (-) 690 WP_004218473.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 70845.69 Da        Isoelectric Point: 5.0237

>NTDB_id=195550 BGL50_RS00885 WP_004218470.1 193451..195370(+) (rcrP) [Bifidobacterium animalis strain BL3]
MIRIMKYLSKTEIGQLVLSLVTIVGQVYFDLELPSYMSQITRLVETPGSQMRDIWIAGGKMLLVSLGSLACAVITGYFAA
RVAASFGQRLRSLEFRKVESFGPSEMHRFSTASLITRSTNDITQIQMFITMGLQMLIKAPIMAVWAVCKIAGEGFEWTLA
TGIAVAILIISIAVLMVLVMPKFKAMQQLTDDINLVTRENLTGMRVVRAYNAQDYQEGKFERANSNLTNTQLFTNRAMSV
MMPLMGTIMNGLSLAIYWIGAYLIQDAGLTDKLTLFSNMVVFSSYAMQVVMSFLLMSMVFVLWPRADVSAHRVLEVLDTD
PLVKSGTAERGLTVQEAKQRGIITPAERARYADDLELAGEIEFRDVSFTYPDSREAMLEHISFTANRGDTVAIIGSTGSG
KSSLINLVPRFYDATDGEVLVDGVNVREYDLKTLRDKIGYVPQRSFLFKGTVESNVSYGDRPDEPEDVPVIDVSRMSGRK
AEREFLKAGEARELTAQEANRVREASDIAQATEFVSKMPKGFQSPIAQGGTNVSGGQKQRLSIARAVYRDPEILIFDDSF
SALDFKTDREVRDALKETAKDATKLIVAQRVGTIMDADCILVLEDGKVVGQGTHRELLETCEVYQEIAKSQLSEEELSA

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=195550 BGL50_RS00885 WP_004218470.1 193451..195370(+) (rcrP) [Bifidobacterium animalis strain BL3]
ATGATACGAATCATGAAATATCTCTCCAAAACGGAGATAGGGCAGCTGGTGTTGTCGCTGGTCACCATTGTGGGCCAGGT
GTACTTCGACCTCGAACTGCCAAGCTATATGTCACAGATCACGCGGCTCGTGGAGACGCCGGGCAGCCAGATGCGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGCTCGCATGCGCGGTGATCACCGGCTACTTCGCCGCG
CGCGTGGCGGCATCGTTCGGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTGGAGTCGTTCGGGCCGTCCGAAATGCA
CCGCTTCTCCACGGCGAGCCTGATCACACGTTCGACGAACGACATCACGCAGATTCAGATGTTCATCACGATGGGCTTGC
AGATGCTCATCAAGGCGCCGATCATGGCCGTCTGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCTGTGGCGATCCTCATCATCTCGATCGCCGTGCTCATGGTGCTCGTCATGCCGAAGTTCAAGGCAATGCA
GCAGCTCACCGACGACATCAATCTGGTGACGCGCGAGAATCTGACCGGCATGCGCGTCGTGCGCGCCTACAATGCCCAGG
ACTACCAGGAAGGCAAGTTCGAGCGGGCGAACAGCAATCTGACGAACACACAGCTGTTCACGAACCGCGCGATGTCGGTG
ATGATGCCGCTCATGGGCACGATCATGAACGGGCTGTCGCTCGCAATCTACTGGATCGGCGCCTACCTGATCCAAGACGC
CGGCCTGACCGACAAACTCACGTTGTTCTCGAACATGGTCGTGTTCTCCAGCTACGCCATGCAGGTGGTGATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCCGACGTCTCCGCACACCGCGTGCTCGAAGTGCTCGACACCGAC
CCGCTCGTCAAGTCCGGCACCGCGGAGCGCGGGCTCACGGTGCAGGAGGCCAAGCAGCGCGGAATCATCACGCCAGCGGA
ACGTGCGCGATATGCCGACGACCTCGAGCTCGCCGGCGAGATCGAATTCCGCGACGTGAGCTTCACCTACCCCGATTCGC
GCGAGGCGATGCTCGAACACATCAGTTTCACGGCGAACAGGGGAGACACGGTGGCGATCATCGGCTCCACCGGTTCGGGC
AAGTCGTCGCTCATCAATCTCGTGCCGCGCTTCTACGATGCGACGGACGGCGAGGTGCTCGTGGACGGCGTGAATGTGCG
CGAATACGACTTGAAGACACTGCGCGACAAGATCGGCTACGTGCCGCAGCGCTCCTTCCTGTTCAAAGGCACCGTCGAAT
CGAATGTGAGCTACGGTGACCGGCCCGACGAACCCGAGGACGTGCCAGTGATCGACGTCTCGCGCATGAGCGGCCGCAAG
GCGGAACGGGAGTTCCTCAAGGCCGGCGAGGCGCGCGAGCTCACCGCGCAGGAGGCGAACCGCGTGCGCGAGGCGAGCGA
CATCGCACAGGCCACCGAATTCGTAAGCAAGATGCCGAAAGGCTTCCAGTCGCCGATCGCCCAGGGTGGCACGAATGTGT
CGGGCGGCCAGAAACAGCGCCTGTCGATTGCGCGCGCCGTGTACCGCGACCCGGAGATTCTGATCTTCGACGATTCGTTC
TCGGCACTCGACTTCAAAACCGACCGCGAGGTGCGCGACGCGTTGAAGGAGACGGCGAAGGACGCGACGAAGCTCATTGT
GGCGCAGCGCGTCGGCACGATCATGGACGCGGACTGCATTCTCGTGCTCGAGGACGGCAAGGTGGTGGGTCAAGGCACGC
ACCGCGAACTGCTCGAGACCTGCGAGGTGTACCAGGAGATCGCGAAATCGCAGCTGAGCGAGGAGGAGCTCAGTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(378-559)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.69

100

0.495

Multiple sequence alignment