Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABE28_RS15775 Genome accession   NZ_CP017080
Coordinates   3238329..3240737 (-) Length   802 a.a.
NCBI ID   WP_064463565.1    Uniprot ID   A0A1B3XRK5
Organism   Peribacillus muralis strain G25-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3233329..3245737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS15750 (ABE28_015750) - 3234733..3235809 (-) 1077 WP_064463559.1 AI-2E family transporter -
  ABE28_RS15755 (ABE28_015755) - 3236039..3236227 (-) 189 WP_064463723.1 hypothetical protein -
  ABE28_RS15760 (ABE28_015760) - 3236245..3236703 (-) 459 WP_064463724.1 PRC-barrel domain-containing protein -
  ABE28_RS15765 (ABE28_015765) - 3236889..3237662 (-) 774 WP_064463561.1 YgcG family protein -
  ABE28_RS15770 (ABE28_015770) - 3237662..3238228 (-) 567 WP_064463563.1 LemA family protein -
  ABE28_RS15775 (ABE28_015775) recD2 3238329..3240737 (-) 2409 WP_064463565.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABE28_RS15780 (ABE28_015780) - 3240776..3241441 (-) 666 WP_064463567.1 tetratricopeptide repeat protein -
  ABE28_RS15785 (ABE28_015785) mnmA 3241562..3242677 (-) 1116 WP_064463568.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABE28_RS15790 (ABE28_015790) - 3242708..3243853 (-) 1146 WP_064463570.1 cysteine desulfurase family protein -
  ABE28_RS15795 (ABE28_015795) cymR 3243916..3244335 (-) 420 WP_057911634.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90377.01 Da        Isoelectric Point: 4.7161

>NTDB_id=195284 ABE28_RS15775 WP_064463565.1 3238329..3240737(-) (recD2) [Peribacillus muralis strain G25-68]
MSQQDSLDLFAEEKMFMKGSHLVTIFHNDDNMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVDTLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTISMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKKLLEENKRDQIEFTNISSEIIELTEEGKIVVEDQRIYPPSLFFSEMGIVKNIKRLLDQTE
YEDQFPESEFLLALGELEERLGVSYASAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLANQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHDIKKGRLPDDVTKQQEDRSFIRCQTGQIAQ
VIEKVVANARTKGFTARDIQVLAPMYRGPAGIDALNKMLQEVFNSNVDEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREALSEAQAPVEEGIVHEPEARYLDIFMQADPMIGMENVTPYD
FM

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=195284 ABE28_RS15775 WP_064463565.1 3238329..3240737(-) (recD2) [Peribacillus muralis strain G25-68]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTGCAGAAGAGAAAATGTTCATGAAGGGTAGCCATTTGGTAACGATTTTTCA
TAATGATGATAATATGTACTCGGTCGTAAGAATTCGCGTTCATGAAACGAATTTGAATTATGAAGAGAAGGAAGCTGTCG
TAACCGGTTATTTTCCAAGGATGCATGAGGACGAGATCTATATTTTTTATGGGGCCATGAAGGAGCATCCGCGTTTTGGC
CTTCAATTTCATGTTGAGCATTTTCGCAAGGATTTGCCCCAATCGAAGGAAGGCATCGTCAGTTATTTGTCCGGTGACCT
TTTTAAAGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGATACGCTAGGGGAAAAGGCAATTTCCAAGATTCTGGCTC
AGCCATCGTTACTTGATGATATCCCGAAGCTATCCGGTGAAAAAGCTAAGGGGCTCTATGACACGTTAGTGGAGCATCAA
GGTCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTCTCGATGAAGATCTATCAAATGTATAA
GCAGGATACGATTTCGATGGTACAGGGAAATCCGTATAAGCTGGTCGAGGATATTGAAGGGATCGGTTTTGGACGGGCGG
ATGAACTAGGGCATCAGCTCGGGATATCCGGAAGCCACCCTGACCGTATCAAGGCTGCCTGCCTGTATACGCTTGAATCA
CAGTGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTAAAGAAGCTGCTTGAGGAAAATAA
ACGGGACCAGATCGAATTCACGAACATTTCCTCGGAAATAATCGAATTGACGGAGGAAGGGAAAATCGTTGTCGAAGATC
AACGGATTTATCCGCCTTCCTTATTCTTTTCCGAAATGGGGATCGTGAAGAACATCAAGCGGCTGCTCGACCAAACAGAG
TATGAGGACCAGTTTCCGGAATCGGAGTTTTTACTGGCACTTGGTGAGTTGGAGGAGCGGCTTGGTGTTTCCTATGCCTC
GGCCCAAAAGGAAGCGATCCAGACAGCCCTGCAATCACCCATGTTAATCTTGACGGGGGGCCCGGGTACCGGTAAGACGA
CGGTCATCAAGGGGATTGTCGAGCTTTATGCAGAGCTTCATGGTGTATCCATGGATATCAATGATTATAAAAAAGAAGGA
AGCGACCCATTTCCCTTTGTCCTTGCGGCCCCTACCGGGCGTGCGGCGAAACGAATGGCTGAATCGACCGGTCTCCCGGC
CGTCACGATTCACCGTTTGCTGGGATGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGTTGGATGGCCGGA
TCGTGATCATCGATGAGGTGTCCATGGTGGATACGTGGCTGGCCAATCAATTATTTAAAGCCCTGCCGGAAAATGTCCAG
GTTATCTTGGTTGGTGATGAAGACCAGCTGCCATCAGTCGGTCCCGGACAGGTTCTGAAGGATCTGCTTGCTTCGAATTG
TGTACCTACGGTCAGTCTTGAGCATATTTATCGTCAAGCTGATGGTTCTTCGATCATTGAATTGGCCCATGATATCAAAA
AGGGAAGGCTGCCAGATGATGTGACGAAGCAGCAAGAAGATCGGTCGTTCATTCGCTGCCAGACCGGCCAAATCGCCCAG
GTTATCGAGAAGGTGGTCGCAAATGCGCGAACAAAGGGCTTCACGGCTAGGGATATACAGGTTTTGGCGCCAATGTACAG
AGGTCCAGCCGGGATCGATGCCTTGAATAAAATGCTTCAGGAAGTTTTCAATAGCAATGTGGATGAAAAGCGGCGGGAAA
TCAAATTTGGCGATGTGATTTACAGGACGGGAGATAAGGTATTGCAGCTGGTGAACCAGCCTGAGGAAGGGGTCTTTAAC
GGCGATATGGGAGAAATCGTGTCGATTTTGTTCGCTAAGGAAAATACCGATCATGTCGATAAAGTCATCATATCGTTTGA
AGGGATCGAAGTGACCTACACGAAACAGGATTTGAACCAGATTACACATGCGTATTGCTGCTCGATTCATAAGTCACAGG
GAAGTGAGTTTCCCATCGTCATCTTGCCTGTAGTGAAAAGCTATTATCGTATGCTTCGGCGCAATCTACTGTATACCGCG
ATCACCCGCAGCAAGAATTTCCTGATTCTTTGTGGGGAAGAAGATGCGTTCCGTCTGGGAATCGAACGGAATGATGAGAT
GCGCCGAAAAACGACCCTCCGTGAAAAGCTGCGCGAGGCTTTGAGCGAAGCTCAAGCTCCGGTTGAAGAGGGCATTGTGC
ATGAGCCTGAGGCACGCTATCTTGATATTTTCATGCAGGCTGACCCGATGATCGGGATGGAAAATGTCACACCTTATGAT
TTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3XRK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.095

100

0.621

Multiple sequence alignment