Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BGM23_RS13375 Genome accession   NZ_CP017072
Coordinates   2601114..2601893 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FJAT-14266     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596114..2606893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS13345 (BGM23_13345) fliH 2596132..2596884 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  BGM23_RS13350 (BGM23_13350) fliG 2596877..2597893 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  BGM23_RS13355 (BGM23_13355) fliF 2597906..2599516 (-) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  BGM23_RS13360 (BGM23_13360) fliE 2599562..2599882 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  BGM23_RS13365 (BGM23_13365) flgC 2599893..2600345 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  BGM23_RS13370 (BGM23_13370) flgB 2600345..2600734 (-) 390 WP_029726489.1 flagellar basal body rod protein FlgB -
  BGM23_RS13375 (BGM23_13375) codY 2601114..2601893 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BGM23_RS13380 (BGM23_13380) hslU 2601933..2603336 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  BGM23_RS13385 (BGM23_13385) clpQ 2603353..2603898 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  BGM23_RS13390 (BGM23_13390) xerC 2603911..2604825 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  BGM23_RS13395 (BGM23_13395) trmFO 2604893..2606200 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=195198 BGM23_RS13375 WP_003220850.1 2601114..2601893(-) (codY) [Bacillus sp. FJAT-14266]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=195198 BGM23_RS13375 WP_003220850.1 2601114..2601893(-) (codY) [Bacillus sp. FJAT-14266]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTAGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment