Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BGM21_RS12695 Genome accession   NZ_CP017071
Coordinates   2533536..2535902 (-) Length   788 a.a.
NCBI ID   WP_069304623.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans strain FJAT-2391     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2528536..2540902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM21_RS12675 (BGM21_12675) ahpC 2529152..2529715 (-) 564 WP_011232052.1 alkyl hydroperoxide reductase subunit C -
  BGM21_RS18780 - 2529950..2530123 (-) 174 WP_014196408.1 hypothetical protein -
  BGM21_RS12680 (BGM21_12680) dtd 2530204..2530662 (-) 459 WP_011232054.1 D-aminoacyl-tRNA deacylase -
  BGM21_RS12685 (BGM21_12685) - 2530686..2532884 (-) 2199 WP_011232055.1 RelA/SpoT family protein -
  BGM21_RS12690 (BGM21_12690) - 2533033..2533545 (-) 513 WP_013144641.1 adenine phosphoribosyltransferase -
  BGM21_RS12695 (BGM21_12695) recJ 2533536..2535902 (-) 2367 WP_069304623.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BGM21_RS12700 (BGM21_12700) - 2535960..2536442 (-) 483 Protein_2511 cation diffusion facilitator family transporter -
  BGM21_RS12705 (BGM21_12705) - 2536542..2538200 (+) 1659 WP_069304063.1 IS1634 family transposase -
  BGM21_RS12710 (BGM21_12710) - 2538330..2538755 (-) 426 Protein_2513 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86802.10 Da        Isoelectric Point: 5.7225

>NTDB_id=195127 BGM21_RS12695 WP_069304623.1 2533536..2535902(-) (recJ) [Geobacillus thermoleovorans strain FJAT-2391]
MLKAKTRWEVERLDEQAVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNPLEQPFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLSLDDVEELRQRLNDIAAETLSEDDFTPPTFIDASCSIAELTLSAARSLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCETGQRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLGSGRPARIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=195127 BGM21_RS12695 WP_069304623.1 2533536..2535902(-) (recJ) [Geobacillus thermoleovorans strain FJAT-2391]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGGCGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGCGGCGTTTCTCAATCCGCTTG
AGCAACCGTTTCATGATCCGTTTTTGCTTGATGGGATGGAGCGAGCGATTCAGCGTCTAAAGCGGGCGATCGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGATGGATGTCATCGTAACGGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATTCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTGATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTCGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCAATCGACCGGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGTCGCTTGA
TGATGTCGAAGAATTACGGCAACGGCTGAACGACATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATTGATGCTTCCTGTTCGATTGCTGAGTTGACGCTGTCGGCCGCCCGCAGCCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCCGTTGAAACCATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTTGGGCCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCGCAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGCTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTCCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGTGAAACTGGGCAGCGCCCGGACGTGGCGCCATTTCGCGGGGAGCTTCATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCCTTGCTGTCGGCGCTTCTTGGCAGCGGGCGGCCGGCGCGCATTTACGCGGTGTTCGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGACCATTTTAAATGGTTTTACGCCTTTTTGCATCAACACCGTTCGTTTCCGCTCGCCAAGC
GCGGTGGTGAGCTGGCCCGCGCCCGCGGTTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCGCTCGTTCATCAGCCGGCGAAGCGCGATTTGCACGAATCGCCGACGTACCG
CCGGCGGCGGGACGAGCTCGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.017

98.858

0.524

Multiple sequence alignment