Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   MTVDSCj16_RS07485 Genome accession   NZ_CP017033
Coordinates   1427288..1427803 (-) Length   171 a.a.
NCBI ID   WP_002879014.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1422288..1432803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS07470 (MTVDSCj16_1486) - 1422397..1424214 (-) 1818 WP_069360657.1 motility associated factor glycosyltransferase family protein -
  MTVDSCj16_RS07475 (MTVDSCj16_1487) - 1424211..1426034 (-) 1824 WP_069360658.1 motility associated factor glycosyltransferase family protein -
  MTVDSCj16_RS07480 (MTVDSCj16_1488) - 1426044..1427288 (-) 1245 WP_057035110.1 DUF2920 family protein -
  MTVDSCj16_RS07485 (MTVDSCj16_1489) ctsG 1427288..1427803 (-) 516 WP_002879014.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MTVDSCj16_RS07490 (MTVDSCj16_1490) tsaD 1427804..1428811 (-) 1008 WP_002879015.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  MTVDSCj16_RS07495 (MTVDSCj16_1491) - 1428808..1430202 (-) 1395 WP_069176596.1 M99 family carboxypeptidase catalytic domain-containing protein -
  MTVDSCj16_RS07500 (MTVDSCj16_1492) dxr 1430204..1431274 (-) 1071 WP_069360659.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MTVDSCj16_RS07505 (MTVDSCj16_1493) cdsA 1431271..1431996 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  MTVDSCj16_RS07510 (MTVDSCj16_1494) - 1432005..1432343 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18742.65 Da        Isoelectric Point: 7.2441

>NTDB_id=194712 MTVDSCj16_RS07485 WP_002879014.1 1427288..1427803(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MRKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=194712 MTVDSCj16_RS07485 WP_002879014.1 1427288..1427803(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGATTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment