Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   MTVDSCj07_RS06660 Genome accession   NZ_CP017031
Coordinates   1279114..1279629 (-) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj07     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1274114..1284629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj07_RS06645 (MTVDSCj07_1282) - 1274201..1276033 (-) 1833 WP_069358679.1 motility associated factor glycosyltransferase family protein -
  MTVDSCj07_RS06650 (MTVDSCj07_1283) - 1276030..1277853 (-) 1824 WP_069358680.1 motility associated factor glycosyltransferase family protein -
  MTVDSCj07_RS06655 (MTVDSCj07_1284) - 1277863..1279114 (-) 1252 Protein_1278 DUF2920 family protein -
  MTVDSCj07_RS06660 (MTVDSCj07_1285) ctsG 1279114..1279629 (-) 516 WP_002903863.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MTVDSCj07_RS06665 (MTVDSCj07_1286) tsaD 1279630..1280637 (-) 1008 WP_002889944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  MTVDSCj07_RS06670 (MTVDSCj07_1287) - 1280634..1282028 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  MTVDSCj07_RS06675 (MTVDSCj07_1288) dxr 1282030..1283100 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MTVDSCj07_RS06680 (MTVDSCj07_1289) cdsA 1283097..1283822 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  MTVDSCj07_RS06685 (MTVDSCj07_1290) - 1283831..1284169 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=194659 MTVDSCj07_RS06660 WP_002903863.1 1279114..1279629(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=194659 MTVDSCj07_RS06660 WP_002903863.1 1279114..1279629(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment