Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BGI23_RS21225 Genome accession   NZ_CP017016
Coordinates   4075493..4077829 (-) Length   778 a.a.
NCBI ID   WP_070806867.1    Uniprot ID   -
Organism   Bacillus sp. ABP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4070493..4082829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS21200 (BGI23_21200) - 4073155..4073499 (+) 345 WP_070806865.1 PH domain-containing protein -
  BGI23_RS21205 (BGI23_21205) - 4073538..4074605 (-) 1068 WP_070806866.1 AI-2E family transporter -
  BGI23_RS21210 (BGI23_21210) - 4074782..4074994 (+) 213 WP_000242543.1 hypothetical protein -
  BGI23_RS21215 (BGI23_21215) - 4075030..4075158 (-) 129 WP_001053553.1 YrzQ family protein -
  BGI23_RS21220 (BGI23_21220) - 4075177..4075365 (-) 189 WP_000469281.1 hypothetical protein -
  BGI23_RS21225 (BGI23_21225) recD2 4075493..4077829 (-) 2337 WP_070806867.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BGI23_RS21230 (BGI23_21230) - 4077926..4078585 (-) 660 WP_000066393.1 tetratricopeptide repeat protein -
  BGI23_RS21235 (BGI23_21235) mnmA 4078695..4079810 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  BGI23_RS21240 (BGI23_21240) - 4079827..4080972 (-) 1146 WP_070806868.1 cysteine desulfurase family protein -
  BGI23_RS21245 (BGI23_21245) cymR 4081008..4081424 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87390.91 Da        Isoelectric Point: 5.2015

>NTDB_id=194503 BGI23_RS21225 WP_070806867.1 4075493..4077829(-) (recD2) [Bacillus sp. ABP14]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLSVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGMLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=194503 BGI23_RS21225 WP_070806867.1 4075493..4077829(-) (recD2) [Bacillus sp. ABP14]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCTCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTCGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTGGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTCAACAAGCAAAAAGCACAAGAAATTTATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGCTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAACTGAGCGTACAGTATGCACCACTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACGGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAGTTGCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGGCCTGGACAAGTATTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACTGTAAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAATGCTCCCACCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTATTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTCGATTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAACGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment