Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BGI23_RS18315 | Genome accession | NZ_CP017016 |
| Coordinates | 3555556..3556335 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. ABP14 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3528935..3574967 | 3555556..3556335 | within | 0 |
Gene organization within MGE regions
Location: 3528935..3574967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BGI23_RS18195 (BGI23_18195) | - | 3529130..3529381 (-) | 252 | WP_001239750.1 | YlmC/YmxH family sporulation protein | - |
| BGI23_RS18200 (BGI23_18200) | - | 3529508..3530749 (-) | 1242 | WP_000592994.1 | pitrilysin family protein | - |
| BGI23_RS18205 (BGI23_18205) | - | 3530836..3531735 (-) | 900 | WP_000857421.1 | polysaccharide deacetylase family protein | - |
| BGI23_RS18210 (BGI23_18210) | pnp | 3531888..3534026 (-) | 2139 | WP_000076746.1 | polyribonucleotide nucleotidyltransferase | - |
| BGI23_RS18215 (BGI23_18215) | rpsO | 3534187..3534456 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BGI23_RS18220 (BGI23_18220) | ribF | 3534557..3535528 (-) | 972 | WP_000766720.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BGI23_RS18225 (BGI23_18225) | truB | 3535572..3536495 (-) | 924 | WP_002194816.1 | tRNA pseudouridine(55) synthase TruB | - |
| BGI23_RS18230 (BGI23_18230) | rbfA | 3536582..3536938 (-) | 357 | WP_000776445.1 | 30S ribosome-binding factor RbfA | - |
| BGI23_RS18235 (BGI23_18235) | - | 3536954..3537235 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BGI23_RS18240 (BGI23_18240) | infB | 3537232..3539292 (-) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| BGI23_RS18245 (BGI23_18245) | - | 3539297..3539608 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BGI23_RS18250 (BGI23_18250) | rnpM | 3539609..3539881 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BGI23_RS18255 (BGI23_18255) | nusA | 3539893..3540999 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BGI23_RS18260 (BGI23_18260) | rimP | 3541017..3541487 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BGI23_RS18265 (BGI23_18265) | - | 3541820..3546121 (-) | 4302 | WP_044791582.1 | PolC-type DNA polymerase III | - |
| BGI23_RS18270 (BGI23_18270) | - | 3546246..3547946 (-) | 1701 | WP_000814305.1 | proline--tRNA ligase | - |
| BGI23_RS18275 (BGI23_18275) | rseP | 3548056..3549312 (-) | 1257 | WP_001090239.1 | RIP metalloprotease RseP | - |
| BGI23_RS18280 (BGI23_18280) | dxr | 3549329..3550471 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BGI23_RS18285 (BGI23_18285) | cdsA | 3550495..3551286 (-) | 792 | WP_044791580.1 | phosphatidate cytidylyltransferase | - |
| BGI23_RS18290 (BGI23_18290) | uppS | 3551304..3552080 (-) | 777 | WP_000971300.1 | isoprenyl transferase | - |
| BGI23_RS18295 (BGI23_18295) | frr | 3552166..3552723 (-) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| BGI23_RS18300 (BGI23_18300) | pyrH | 3552726..3553448 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| BGI23_RS18305 (BGI23_18305) | tsf | 3553515..3554402 (-) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| BGI23_RS18310 (BGI23_18310) | rpsB | 3554506..3555207 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BGI23_RS18315 (BGI23_18315) | codY | 3555556..3556335 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BGI23_RS18320 (BGI23_18320) | hslU | 3556413..3557804 (-) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| BGI23_RS18325 (BGI23_18325) | hslV | 3557827..3558369 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BGI23_RS18330 (BGI23_18330) | xerC | 3558412..3559311 (-) | 900 | WP_001101228.1 | tyrosine recombinase XerC | - |
| BGI23_RS18335 (BGI23_18335) | trmFO | 3559377..3560681 (-) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BGI23_RS18340 (BGI23_18340) | topA | 3560732..3562810 (-) | 2079 | WP_001286973.1 | type I DNA topoisomerase | - |
| BGI23_RS18345 (BGI23_18345) | dprA | 3562955..3563824 (-) | 870 | WP_061131599.1 | DNA-processing protein DprA | - |
| BGI23_RS18350 (BGI23_18350) | sucD | 3563912..3564814 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BGI23_RS18355 (BGI23_18355) | sucC | 3564834..3565994 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BGI23_RS18360 (BGI23_18360) | rnhB | 3566188..3566961 (-) | 774 | WP_001174718.1 | ribonuclease HII | - |
| BGI23_RS18365 (BGI23_18365) | ylqF | 3567013..3567903 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| BGI23_RS18370 (BGI23_18370) | lepB | 3567924..3568475 (-) | 552 | WP_000711860.1 | signal peptidase I | - |
| BGI23_RS18375 (BGI23_18375) | rplS | 3568577..3568921 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BGI23_RS18380 (BGI23_18380) | trmD | 3569068..3569802 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BGI23_RS18385 (BGI23_18385) | rimM | 3569802..3570317 (-) | 516 | WP_044791576.1 | ribosome maturation factor RimM | - |
| BGI23_RS18390 (BGI23_18390) | - | 3570438..3570665 (-) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| BGI23_RS18395 (BGI23_18395) | rpsP | 3570680..3570952 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BGI23_RS18400 (BGI23_18400) | ffh | 3571053..3572402 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| BGI23_RS18405 (BGI23_18405) | - | 3572415..3572747 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BGI23_RS18410 (BGI23_18410) | ftsY | 3572881..3573870 (-) | 990 | WP_000007646.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=194495 BGI23_RS18315 WP_000421288.1 3555556..3556335(-) (codY) [Bacillus sp. ABP14]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=194495 BGI23_RS18315 WP_000421288.1 3555556..3556335(-) (codY) [Bacillus sp. ABP14]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |