Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC55_RS20270 Genome accession   NZ_CP016987
Coordinates   190143..191003 (-) Length   286 a.a.
NCBI ID   WP_096070799.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185143..196003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS00960 (FORC55_0160) gspL 185401..186612 (+) 1212 WP_001965882.1 type II secretion system protein GspL -
  FORC55_RS00965 (FORC55_0161) - 186622..187119 (+) 498 WP_000661347.1 type II secretion system protein M -
  FORC55_RS00970 (FORC55_0162) - 187121..187879 (+) 759 WP_096070302.1 type II secretion system protein N -
  FORC55_RS00975 (FORC55_0163) cysQ 187931..188758 (-) 828 WP_096070303.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC55_RS00980 (FORC55_0164) nudE 188781..189329 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  FORC55_RS00985 (FORC55_0165) nfuA 189468..190055 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  FORC55_RS20270 (FORC55_0166) comF 190143..191003 (-) 861 WP_096070799.1 ComF family protein Machinery gene
  FORC55_RS00995 (FORC55_0167) bioH 190939..191700 (+) 762 WP_180949853.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC55_RS01000 (FORC55_0168) - 191861..192331 (+) 471 WP_000961393.1 hypothetical protein -
  FORC55_RS01005 (FORC55_0169) - 192426..194747 (-) 2322 WP_000030094.1 Tex family protein -
  FORC55_RS01010 (FORC55_0170) greB 194992..195474 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32487.41 Da        Isoelectric Point: 8.0588

>NTDB_id=194339 FORC55_RS20270 WP_096070799.1 190143..191003(-) (comF) [Vibrio cholerae strain FORC_055 isolate MFDS]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDTVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANALNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPSQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=194339 FORC55_RS20270 WP_096070799.1 190143..191003(-) (comF) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCAGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCAACTCTCACTCC
TGTTGACCAGTGCGGGCAGTGTTTGGGCCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATACGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGCGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAGCCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment