Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CCD86_RS04695 Genome accession   NZ_CP021518
Coordinates   782978..783595 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-176     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 777978..788595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD86_RS04675 (CCD86_04695) recD 778691..780436 (-) 1746 WP_002229484.1 exodeoxyribonuclease V subunit alpha Machinery gene
  CCD86_RS04680 (CCD86_04700) lolD 780504..781199 (-) 696 WP_002229480.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CCD86_RS04685 (CCD86_04705) - 781192..782439 (-) 1248 WP_002229486.1 lipoprotein-releasing ABC transporter permease subunit -
  CCD86_RS04690 (CCD86_04710) - 782644..782922 (+) 279 WP_002220967.1 hypothetical protein -
  CCD86_RS04695 (CCD86_04715) recR 782978..783595 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  CCD86_RS04700 (CCD86_04720) - 783662..785200 (-) 1539 WP_002229497.1 SurA N-terminal domain-containing protein -
  CCD86_RS04705 (CCD86_04725) - 785260..785634 (-) 375 WP_002229491.1 arsenate reductase -
  CCD86_RS04710 (CCD86_04730) - 785784..787412 (+) 1629 WP_002260424.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=193833 CCD86_RS04695 WP_002217147.1 782978..783595(-) (recR) [Neisseria meningitidis strain 12-176]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=193833 CCD86_RS04695 WP_002217147.1 782978..783595(-) (recR) [Neisseria meningitidis strain 12-176]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment