Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BARD7_RS11835 Genome accession   NZ_CP016913
Coordinates   2414801..2417158 (-) Length   785 a.a.
NCBI ID   WP_065981968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2409801..2422158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS11815 (BARD7_02422) - 2409885..2411438 (+) 1554 WP_065981966.1 SH3 domain-containing protein -
  BARD7_RS11820 (BARD7_02423) dtd 2411465..2411908 (-) 444 WP_013353029.1 D-aminoacyl-tRNA deacylase -
  BARD7_RS11825 (BARD7_02424) relA 2411921..2414125 (-) 2205 WP_065981967.1 GTP diphosphokinase -
  BARD7_RS11830 (BARD7_02425) - 2414283..2414795 (-) 513 WP_013353031.1 adenine phosphoribosyltransferase -
  BARD7_RS11835 (BARD7_02426) recJ 2414801..2417158 (-) 2358 WP_065981968.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BARD7_RS11840 (BARD7_02427) - 2417214..2417540 (-) 327 WP_065981969.1 LapA family protein -
  BARD7_RS11845 (BARD7_02428) - 2417604..2418101 (-) 498 WP_065981970.1 cation:proton antiporter regulatory subunit -
  BARD7_RS11850 (BARD7_02429) secDF 2418232..2420451 (-) 2220 WP_065981971.1 protein translocase subunit SecDF -
  BARD7_RS11855 (BARD7_02430) - 2420488..2420784 (-) 297 WP_065981972.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87305.66 Da        Isoelectric Point: 4.9181

>NTDB_id=193641 BARD7_RS11835 WP_065981968.1 2414801..2417158(-) (recJ) [Bacillus amyloliquefaciens strain RD7-7]
MLASKMRWEIQQPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFYDPYELKGMREAVDRIKLAVSRG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTDDQFEAEELASDIDRLNKE
RQKMVKNMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDSAVLDCVGFNKGELEAGVVPGSTISIVGEMSINEWNNRKKPQLMIKDA
AVPEWQLFDIRGKRTWEDTVTALPKEKRVLISFNEITAQKLRAELSGELAEITSESEAEALPLDGKYAVFLDVPPSADRL
QRLLDGKRPERIYFVFINHEEHFLSSFPSRNDFKWFYAFLLKRGTFDLGRHGSELARHRGWSIDTINFMTKVFFDLGFVK
IEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=193641 BARD7_RS11835 WP_065981968.1 2414801..2417158(-) (recJ) [Bacillus amyloliquefaciens strain RD7-7]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATAAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGTGCAAGGCTGTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCCCGCGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATGCTGACGGCGCTCAGACAGCT
GTCAGCGAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCACTTATCATTACAGTGGATACTGGTATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTC
GGTTTAGACGTCATTATTACCGACCACCATGAGCCTGGACCCGAGCTTCCTGACGTATTTGCGATTATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGCGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTGGCGGCGATCGGTACGGTTGCTGATCTGGTGCCCCTGCATGATGAAAACAGATTAATA
GCGTCGCTTGGGATCGAAAGGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGCGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTCGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCCGATC
CCGCCGTGCACCTGTTGATGACCGATGACCAGTTTGAAGCGGAGGAGCTGGCTTCGGATATTGACCGGCTGAATAAAGAG
CGGCAGAAAATGGTGAAAAACATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCTTCTGCCATTGT
CGTGGCAAAAGCAGGCTGGAATCCGGGAGTTGTCGGTATTGTCGCATCGAAGCTGGCTGAACGCTTTTACCGGCCCGCTG
TCGTGCTGGGGATTGATGAGGAGCAGGGAATCGCCAAAGGGTCGGCGCGAAGCATCAGAGGCTTCAACCTTTTTACGAGC
CTATCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGACATCCGATGGCCGCAGGAATGACTTTGAAGGCTGAAGATGT
GGCAGATTTAAGGGACCGGCTGAATCAAATGGCTGAAGAAACCCTTACCGAAGAGGATTTTATCCCCGTTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATCACCGTTGAAAGCATTACAGAATTGAATATGCTGTCGCCGTTCGGCATGCTTAAC
CCTAAACCTCATGTGATGGTGGAAAACGCCGTGCTTGATGAAGTGCGGCTGATCGGAGCAAATAAAAATCACGTGAAAAT
GACGGTAAAAAATGATTCCGCCGTTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTTGAAGCCGGGGTTGTTCCCGGAT
CAACGATTTCCATTGTCGGCGAGATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGATGCT
GCGGTGCCGGAATGGCAGCTTTTTGATATCAGGGGCAAGCGGACGTGGGAAGACACGGTCACTGCGCTGCCTAAGGAAAA
ACGGGTGCTCATCAGCTTTAACGAAATAACCGCCCAAAAGCTCCGTGCCGAGCTTTCGGGTGAGCTGGCTGAAATCACGT
CGGAATCCGAAGCAGAAGCTCTTCCGCTTGACGGAAAGTATGCCGTTTTTCTGGATGTGCCGCCGTCAGCGGACCGCCTC
CAGCGTTTGCTTGACGGGAAGAGGCCGGAACGGATTTATTTTGTTTTTATTAATCATGAAGAACATTTCCTGTCCTCATT
TCCATCGCGGAATGACTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCACTTTTGACTTAGGCAGGCATGGCTCAG
AGCTTGCAAGACACAGAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAA
ATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTATCAGGTAAAACA
GCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCAGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGAACC
AAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.934

100

0.82

Multiple sequence alignment