Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BARD7_RS10995 Genome accession   NZ_CP016913
Coordinates   2255328..2255636 (-) Length   102 a.a.
NCBI ID   WP_081309506.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2250328..2260636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS10945 (BARD7_02246) sinR 2250491..2250826 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  BARD7_RS10950 (BARD7_02247) tasA 2250874..2251659 (-) 786 WP_065981876.1 biofilm matrix protein TasA -
  BARD7_RS10955 (BARD7_02248) sipW 2251724..2252308 (-) 585 WP_065981877.1 signal peptidase I SipW -
  BARD7_RS10960 (BARD7_02249) tapA 2252280..2252951 (-) 672 WP_065981878.1 amyloid fiber anchoring/assembly protein TapA -
  BARD7_RS10965 (BARD7_02250) - 2253209..2253538 (+) 330 WP_045510605.1 DUF3889 domain-containing protein -
  BARD7_RS10970 (BARD7_02251) - 2253579..2253758 (-) 180 WP_016938971.1 YqzE family protein -
  BARD7_RS10975 (BARD7_02252) comGG 2253815..2254192 (-) 378 WP_065981879.1 competence type IV pilus minor pilin ComGG Machinery gene
  BARD7_RS10980 comGF 2254194..2254694 (-) 501 WP_231131085.1 competence type IV pilus minor pilin ComGF -
  BARD7_RS10985 (BARD7_02254) comGE 2254603..2254917 (-) 315 WP_065981881.1 competence type IV pilus minor pilin ComGE Machinery gene
  BARD7_RS10990 (BARD7_02255) comGD 2254901..2255338 (-) 438 WP_065981882.1 competence type IV pilus minor pilin ComGD Machinery gene
  BARD7_RS10995 (BARD7_02256) comGC 2255328..2255636 (-) 309 WP_081309506.1 competence type IV pilus major pilin ComGC Machinery gene
  BARD7_RS11000 (BARD7_02257) comGB 2255641..2256678 (-) 1038 WP_065981883.1 competence type IV pilus assembly protein ComGB Machinery gene
  BARD7_RS11005 (BARD7_02258) comGA 2256665..2257735 (-) 1071 WP_065981884.1 competence type IV pilus ATPase ComGA Machinery gene
  BARD7_RS11010 (BARD7_02259) - 2257928..2258878 (-) 951 WP_065981885.1 magnesium transporter CorA family protein -
  BARD7_RS11015 (BARD7_02260) - 2259025..2260326 (+) 1302 WP_065981886.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11452.40 Da        Isoelectric Point: 6.7081

>NTDB_id=193633 BARD7_RS10995 WP_081309506.1 2255328..2255636(-) (comGC) [Bacillus amyloliquefaciens strain RD7-7]
MLRLKNQEGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTSYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILIKGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=193633 BARD7_RS10995 WP_081309506.1 2255328..2255636(-) (comGC) [Bacillus amyloliquefaciens strain RD7-7]
GTGCTTCGTCTGAAAAATCAAGAAGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATTGTTTCCATTCTGCTTTT
AATCACGATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGTCGTACGAAATCGACCATGAAGGAAAAATGCCGGATATGAACGACTTACAATCAGAGGGATATATCAAA
AAGAATACAGCCTGCCCGAATGGAAAACAGATTTTAATAAAGGGCGGGGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

76.042

94.118

0.716
  comGC Staphylococcus aureus MW2

40.625

94.118

0.382
  comGC Staphylococcus aureus N315

40.625

94.118

0.382

Multiple sequence alignment