Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BARD7_RS07625 Genome accession   NZ_CP016913
Coordinates   1540872..1541651 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535872..1546651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS07605 (BARD7_01556) trmFO 1536559..1537866 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BARD7_RS07610 (BARD7_01557) xerC 1537936..1538853 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  BARD7_RS07615 (BARD7_01558) hslV 1538869..1539414 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  BARD7_RS07620 (BARD7_01559) hslU 1539431..1540834 (+) 1404 WP_065981442.1 HslU--HslV peptidase ATPase subunit -
  BARD7_RS07625 (BARD7_01560) codY 1540872..1541651 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BARD7_RS07630 (BARD7_01561) flgB 1542006..1542395 (+) 390 WP_065981443.1 flagellar basal body rod protein FlgB -
  BARD7_RS07635 (BARD7_01562) flgC 1542395..1542847 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  BARD7_RS07640 (BARD7_01563) fliE 1542858..1543178 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BARD7_RS07645 (BARD7_01564) fliF 1543221..1544831 (+) 1611 WP_065981444.1 flagellar basal-body MS-ring/collar protein FliF -
  BARD7_RS07650 (BARD7_01565) fliG 1544844..1545860 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  BARD7_RS07655 (BARD7_01566) fliH 1545853..1546608 (+) 756 WP_065981445.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=193621 BARD7_RS07625 WP_013352252.1 1540872..1541651(+) (codY) [Bacillus amyloliquefaciens strain RD7-7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=193621 BARD7_RS07625 WP_013352252.1 1540872..1541651(+) (codY) [Bacillus amyloliquefaciens strain RD7-7]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTTGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment