Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSHJ0_RS08625 Genome accession   NZ_CP016894
Coordinates   1643220..1643999 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain HJ0-6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638220..1648999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS08605 (BSHJ0_01682) trmFO 1638913..1640220 (+) 1308 WP_029317796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSHJ0_RS08610 (BSHJ0_01683) xerC 1640288..1641202 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  BSHJ0_RS08615 (BSHJ0_01684) clpQ 1641215..1641760 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  BSHJ0_RS08620 (BSHJ0_01685) hslU 1641777..1643180 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  BSHJ0_RS08625 (BSHJ0_01686) codY 1643220..1643999 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSHJ0_RS08630 (BSHJ0_01687) flgB 1644379..1644768 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  BSHJ0_RS08635 (BSHJ0_01688) flgC 1644768..1645220 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  BSHJ0_RS08640 (BSHJ0_01689) fliE 1645231..1645551 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  BSHJ0_RS08645 (BSHJ0_01690) fliF 1645597..1647207 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  BSHJ0_RS08650 (BSHJ0_01691) fliG 1647220..1648236 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  BSHJ0_RS08655 (BSHJ0_01692) fliH 1648229..1648981 (+) 753 WP_038428148.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=193442 BSHJ0_RS08625 WP_003220850.1 1643220..1643999(+) (codY) [Bacillus subtilis strain HJ0-6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=193442 BSHJ0_RS08625 WP_003220850.1 1643220..1643999(+) (codY) [Bacillus subtilis strain HJ0-6]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment