Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   S100757_RS08500 Genome accession   NZ_CP021499
Coordinates   1603740..1604189 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain SRCM100757     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598740..1609189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100757_RS08460 (S100757_01673) ctaE 1598757..1599380 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  S100757_RS08465 (S100757_01674) ctaF 1599383..1599715 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  S100757_RS08470 (S100757_01675) ctaG 1599743..1600636 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  S100757_RS08475 (S100757_01676) ylbA 1600668..1601030 (-) 363 WP_003232238.1 YugN family protein -
  S100757_RS08480 (S100757_01677) ylbB 1601170..1601616 (+) 447 WP_046160383.1 CBS domain-containing protein -
  S100757_RS08485 (S100757_01678) ylbC 1601700..1602740 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  S100757_RS08490 (S100757_01679) ylbD 1602971..1603369 (+) 399 WP_046160384.1 YlbD family protein -
  S100757_RS08495 (S100757_01680) ylbE 1603385..1603624 (+) 240 WP_003232231.1 YlbE-like family protein -
  S100757_RS08500 (S100757_01681) ylbF 1603740..1604189 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  S100757_RS08505 (S100757_01682) ylbG 1604244..1604516 (+) 273 WP_009967171.1 YlbG family protein -
  S100757_RS08510 (S100757_01683) rsmD 1604839..1605393 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S100757_RS08515 (S100757_01684) coaD 1605398..1605883 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  S100757_RS08520 (S100757_01685) spoVV 1605894..1607120 (-) 1227 WP_087614544.1 dipicolinic acid transporter SpoVV -
  S100757_RS08525 (S100757_01686) ylbK 1607301..1608083 (+) 783 WP_003232221.1 patatin family protein -
  S100757_RS08530 (S100757_01687) sepM 1608085..1609110 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=193352 S100757_RS08500 WP_003221370.1 1603740..1604189(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM100757]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=193352 S100757_RS08500 WP_003221370.1 1603740..1604189(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM100757]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1