Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   S101444_RS08505 Genome accession   NZ_CP021498
Coordinates   1603730..1604179 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598730..1609179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS08465 (S101444_01681) ctaE 1598747..1599370 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  S101444_RS08470 (S101444_01682) ctaF 1599373..1599705 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  S101444_RS08475 (S101444_01683) ctaG 1599733..1600626 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  S101444_RS08480 (S101444_01684) ylbA 1600658..1601020 (-) 363 WP_003232238.1 YugN family protein -
  S101444_RS08485 (S101444_01685) ylbB 1601160..1601606 (+) 447 WP_046160383.1 CBS domain-containing protein -
  S101444_RS08490 (S101444_01686) ylbC 1601690..1602730 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  S101444_RS08495 (S101444_01687) ylbD 1602961..1603359 (+) 399 WP_046160384.1 YlbD family protein -
  S101444_RS08500 (S101444_01688) ylbE 1603375..1603614 (+) 240 WP_003232231.1 YlbE-like family protein -
  S101444_RS08505 (S101444_01689) ylbF 1603730..1604179 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  S101444_RS08510 (S101444_01690) ylbG 1604234..1604506 (+) 273 WP_009967171.1 YlbG family protein -
  S101444_RS08515 (S101444_01691) rsmD 1604829..1605383 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S101444_RS08520 (S101444_01692) coaD 1605388..1605873 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  S101444_RS08525 (S101444_01693) spoVV 1605884..1607110 (-) 1227 WP_087614544.1 dipicolinic acid transporter SpoVV -
  S101444_RS08530 (S101444_01694) ylbK 1607291..1608073 (+) 783 WP_003232221.1 patatin family protein -
  S101444_RS08535 (S101444_01695) sepM 1608075..1609100 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=193203 S101444_RS08505 WP_003221370.1 1603730..1604179(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=193203 S101444_RS08505 WP_003221370.1 1603730..1604179(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment