Detailed information NTG0193172

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: S101444_RS05270
• Genome accession: NZ_CP021498
• Coordinates: 1000672..1001844 (+)
• Length: 390 a.a.
• NCBI ID: WP_087614474.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain SRCM101444
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 995672..1006844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101444_RS05240 (S101444_01032)	-	995775..996764 (+)	990	WP_087614469.1	bifunctional lytic transglycosylase/C40 family peptidase	-
S101444_RS05245 (S101444_01033)	-	996779..997285 (+)	507	WP_043858078.1	hypothetical protein	-
S101444_RS05250 (S101444_01034)	-	997348..997731 (+)	384	WP_087614470.1	cystatin-like fold lipoprotein	-
S101444_RS05255 (S101444_01035)	-	998043..998807 (+)	765	WP_087614471.1	hypothetical protein	-
S101444_RS05260 (S101444_01036)	-	998851..999261 (+)	411	WP_087614472.1	hypothetical protein	-
S101444_RS05265 (S101444_01037)	-	999570..1000298 (+)	729	WP_087614473.1	DUF4145 domain-containing protein	-
S101444_RS05270 (S101444_01038)	rapF	1000672..1001844 (+)	1173	WP_087614474.1	Rap family tetratricopeptide repeat protein	Regulator
S101444_RS05275 (S101444_01040)	-	1002108..1002554 (-)	447	WP_015252490.1	hypothetical protein	-
S101444_RS05280 (S101444_01041)	yhcN	1002704..1003273 (+)	570	WP_015252489.1	YhcN/YlaJ family sporulation lipoprotein	-
S101444_RS05285 (S101444_01042)	-	1003394..1004362 (+)	969	WP_087614475.1	hypothetical protein	-
S101444_RS05290 (S101444_01043)	yhcQ	1004294..1004947 (-)	654	WP_015715563.1	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46117.53 Da
• Isoelectric Point: 5.6997

>NTDB_id=193172 S101444_RS05270 WP_087614474.1 1000672..1001844(+) (rapF) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MRGVLDKDKIPYDVVTKRLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=193172 S101444_RS05270 WP_087614474.1 1000672..1001844(+) (rapF) [Bacillus subtilis subsp. subtilis strain SRCM101444]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACCAAAAGATTAAACGAATGGTACACTCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	37.831	96.923	0.367