Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BFC19_RS03120 Genome accession   NZ_CP016839
Coordinates   631672..634050 (-) Length   792 a.a.
NCBI ID   WP_069133303.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain TMW 2.1564     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626672..639050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC19_RS03085 (BFC19_03055) - 627547..628077 (+) 531 WP_029091225.1 hypothetical protein -
  BFC19_RS03090 (BFC19_03060) - 628120..628494 (-) 375 WP_029091224.1 DUF1304 domain-containing protein -
  BFC19_RS03095 (BFC19_03065) - 628498..629154 (-) 657 WP_029091223.1 nitroreductase family protein -
  BFC19_RS03100 (BFC19_03070) - 629147..629581 (-) 435 WP_029091222.1 MarR family winged helix-turn-helix transcriptional regulator -
  BFC19_RS03105 (BFC19_03075) - 629610..630032 (-) 423 WP_029091221.1 organic hydroperoxide resistance protein -
  BFC19_RS03110 (BFC19_03080) - 630550..631110 (-) 561 WP_119945560.1 hypothetical protein -
  BFC19_RS03120 (BFC19_03085) recD2 631672..634050 (-) 2379 WP_069133303.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BFC19_RS03125 (BFC19_03090) - 634072..634734 (-) 663 WP_069118849.1 tetratricopeptide repeat protein -
  BFC19_RS03130 (BFC19_03095) mnmA 635559..636677 (-) 1119 WP_029091218.1 tRNA 2-thiouridine(34) synthase MnmA -
  BFC19_RS03135 (BFC19_03100) - 636692..637834 (-) 1143 WP_069126285.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88511.86 Da        Isoelectric Point: 4.8893

>NTDB_id=192589 BFC19_RS03120 WP_069133303.1 631672..634050(-) (recD2) [Brochothrix thermosphacta strain TMW 2.1564]
MTDTMNTSEGENIPPYVKGNVVTTIFHNATNLFSVLRMEVKESNVEWDDREIVITGYLPELSQEDRYHLEGTVSEHPKYG
RQFQVTTFRKEMPATKAGVSTYLSGEMFKGVGKKTAERIVDILGNDAISRILQDPTVLDQVPKLTTKLKESLAKTLQENE
GIELVMIKLNEMGFGPQLAMRIFQTYQQKTMEVINENPYQLIHDVTGIGFNRADELGQKIGMGGNHPSRLSAALMFTVDS
ESMQNGHVYMEYDETVLATKRLLLSSNGSSVIAENEISDALQELLQNNELVQEETRIYLPSLYHAEKGVAHHLMRLEKAQ
AKRTTFPKSEFLKALGELEERINVTYAPSQSDAIETALNSSTMILTGGPGTGKTTVIKGIVELFAELNGVSLDPSEYKDG
KTFPVVLAAPTGRAAKRMSESTNLPAMTIHRLLGMTGQENKSEDVDRDIEGQLLIIDETSMVDIWLANQLLRAVPTNMQV
IFVGDKDQLPSVGPGQFLKDILKSEVIPTISLTEIYRQAEGSSIIELAHHVKDGVLPADFTKNQSDRSFFRCNTQQLSEV
VGQVVKNAVKKGFTSKDIQVLIPMYRGPAGINKMNEELQEILNPNPEGKRKEITYGDVIYRVGDKVLQLVNQPESNVFNG
DMGTIVSIIYAKETVEKQDTLVIEFDQTEVTYLRGDLNQITHAYCCSVHKAQGSEFPIVILPLLKSYYRMLRRDILYTAM
TRSRQFLIMCGEEDAFAQATVRQSDVARQTSLFERLTRTTAELEPVNEAGEYILTPENIHSIDPMIGMVESP

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=192589 BFC19_RS03120 WP_069133303.1 631672..634050(-) (recD2) [Brochothrix thermosphacta strain TMW 2.1564]
ATGACGGATACAATGAACACATCAGAGGGTGAAAATATACCACCGTATGTTAAAGGCAATGTGGTCACCACCATCTTTCA
TAATGCCACTAACTTGTTTTCTGTGTTGCGTATGGAAGTGAAAGAAAGTAATGTCGAATGGGATGACCGTGAAATTGTCA
TCACCGGTTATCTACCAGAACTTTCACAAGAAGACCGTTATCATTTAGAAGGAACGGTATCAGAACATCCAAAGTATGGA
CGACAGTTTCAGGTCACAACTTTCAGAAAAGAAATGCCTGCTACTAAGGCGGGTGTTTCTACTTATTTATCTGGAGAAAT
GTTCAAAGGTGTCGGTAAAAAGACTGCTGAACGAATTGTCGATATACTAGGTAACGATGCAATTTCACGGATTTTACAAG
ATCCAACTGTGTTAGATCAAGTCCCAAAATTAACAACAAAATTAAAAGAATCATTAGCCAAAACACTTCAAGAAAATGAA
GGCATTGAATTGGTGATGATTAAACTTAATGAAATGGGATTTGGTCCCCAATTAGCGATGCGTATTTTTCAAACATACCA
ACAAAAAACGATGGAAGTTATTAATGAAAATCCGTATCAATTGATTCATGATGTCACAGGTATCGGCTTTAATCGTGCGG
ATGAACTGGGCCAAAAAATTGGTATGGGTGGTAATCATCCTTCTCGTTTAAGTGCAGCACTGATGTTTACGGTTGATTCG
GAAAGTATGCAAAACGGTCATGTTTATATGGAATATGATGAAACGGTATTAGCTACAAAGCGTTTATTATTAAGTAGTAA
TGGCTCTTCTGTAATTGCGGAAAATGAAATTAGTGACGCATTGCAAGAACTATTACAAAATAATGAGCTTGTGCAAGAAG
AGACACGCATCTATTTACCATCGTTGTATCATGCCGAAAAAGGTGTCGCACATCATTTAATGCGACTTGAAAAAGCACAG
GCGAAGCGTACAACTTTTCCGAAGTCAGAGTTTTTAAAAGCGCTTGGTGAATTGGAAGAACGTATTAATGTAACCTATGC
ACCGTCTCAAAGTGATGCGATTGAAACAGCTTTAAATTCGTCAACAATGATTTTAACAGGTGGACCAGGTACAGGTAAAA
CAACTGTTATTAAAGGGATTGTTGAATTGTTTGCTGAATTAAATGGCGTTAGTCTAGATCCAAGTGAATATAAAGATGGA
AAAACATTCCCTGTCGTTTTGGCAGCACCCACGGGACGAGCAGCAAAACGTATGAGTGAATCGACTAATCTACCTGCGAT
GACAATTCATCGTTTATTGGGGATGACAGGTCAAGAAAATAAGTCTGAAGATGTTGATCGTGATATTGAAGGACAATTGC
TTATTATCGATGAAACAAGTATGGTTGATATTTGGCTAGCAAACCAACTGTTGCGAGCTGTGCCAACTAATATGCAGGTT
ATTTTTGTCGGTGATAAAGACCAGTTGCCATCAGTAGGGCCGGGTCAGTTTTTAAAAGATATTTTAAAATCAGAAGTCAT
TCCAACAATTTCGCTAACAGAAATTTATCGACAAGCAGAAGGCTCATCGATTATTGAATTGGCTCACCATGTAAAAGATG
GCGTTTTGCCTGCTGATTTTACTAAAAATCAGTCAGATCGTTCGTTTTTCCGTTGTAATACACAACAGTTGTCAGAAGTA
GTGGGGCAAGTGGTTAAAAATGCCGTGAAAAAAGGTTTTACTTCTAAGGATATTCAAGTGTTGATCCCGATGTATCGTGG
TCCTGCTGGAATTAATAAAATGAATGAAGAGCTGCAGGAAATTTTAAATCCTAACCCTGAGGGTAAGCGGAAAGAAATAA
CCTATGGCGATGTGATTTATCGTGTGGGTGATAAAGTGCTGCAACTTGTTAATCAGCCTGAGAGTAACGTTTTTAATGGT
GATATGGGAACAATTGTATCAATTATCTATGCGAAGGAAACCGTCGAAAAACAAGATACGCTTGTCATTGAATTTGATCA
AACAGAAGTGACATACTTACGCGGTGATTTGAACCAAATTACGCATGCCTATTGTTGCTCTGTGCATAAAGCACAAGGAT
CTGAATTCCCAATTGTTATTTTACCGTTATTAAAAAGTTATTATCGAATGTTACGCCGTGATATTTTATACACAGCGATG
ACTAGAAGTCGGCAATTTTTAATTATGTGTGGCGAAGAAGATGCCTTTGCGCAAGCGACAGTGAGGCAATCAGACGTTGC
GCGACAAACATCGTTATTTGAACGACTTACTCGCACAACTGCAGAGTTAGAACCGGTGAATGAAGCAGGAGAATATATTT
TAACACCTGAAAATATTCATTCAATTGACCCAATGATTGGTATGGTAGAGAGTCCGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.613

97.854

0.544

Multiple sequence alignment