Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BC359_RS04655 Genome accession   NZ_CP016790
Coordinates   907037..909400 (+) Length   787 a.a.
NCBI ID   WP_078989252.1    Uniprot ID   -
Organism   Priestia flexa strain KLBMP 4941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902037..914400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC359_RS04630 (BC359_04625) - 902044..903309 (-) 1266 WP_078989249.1 replication-associated recombination protein A -
  BC359_RS04635 (BC359_04630) cymR 903511..903927 (+) 417 WP_025911725.1 cysteine metabolism transcriptional regulator CymR -
  BC359_RS04640 (BC359_04635) - 903954..905096 (+) 1143 WP_078989250.1 cysteine desulfurase family protein -
  BC359_RS04645 (BC359_04640) mnmA 905125..906237 (+) 1113 WP_061784993.1 tRNA 2-thiouridine(34) synthase MnmA -
  BC359_RS04650 (BC359_04645) - 906349..907008 (+) 660 WP_078989251.1 tetratricopeptide repeat protein -
  BC359_RS04655 (BC359_04650) recD2 907037..909400 (+) 2364 WP_078989252.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BC359_RS04660 (BC359_04655) - 909530..909721 (+) 192 WP_025911719.1 hypothetical protein -
  BC359_RS04665 - 909743..909877 (+) 135 WP_076512682.1 YrzQ family protein -
  BC359_RS04670 (BC359_04660) - 910005..911069 (+) 1065 WP_418312617.1 AI-2E family transporter -
  BC359_RS04675 (BC359_04665) alaS 911468..914101 (+) 2634 WP_061784995.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88949.77 Da        Isoelectric Point: 4.9945

>NTDB_id=192259 BC359_RS04655 WP_078989252.1 907037..909400(+) (recD2) [Priestia flexa strain KLBMP 4941]
MSEEVLNPLQPDEEKTYIKGTAIVTVFHNEENLYNVTRIRIKETNVSMDDKEAIVTGYFPRLNEDELYTFIGNFKEHPKF
GLQFQVEQFKKELPQSKQGVIQYLSSDLFNGIGKKTAENIVEALGERAIYRMLQDPAVLKKVSRLSADKAEKLIVQLREH
QGLEEVMVKLTDLGFGPQLSMKIFQAYKQEALEVIQTNPYQLVEDVQGIGFNRADELGRKLGLATNHPNRLRAGILYVIE
HECNQMGHVYVKAEQLYQKTGELLQKSRQEPLSEMDIIREIDALKEEKKIIIDDDKMYFPPLFYAEKGVVKAIGKLMAQT
EYEEQFPESEFLLALGELEERLGVQYAPSQREGIQKALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKD
EGFPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPINGKLLIVDEVSMVDLWLAHQLFKSLPASIQV
VLVGDEDQLPSVGPGQVLKDLLHSEAVPTVRLTDVYRQEEGSSIIDFAHEIKKGRLPSDLTNQQGDRSFIRCYGAQITDV
VKQVCGNAVKKGYTAKDIQVLAPMYKGPAGIDKMNEVLQELFNPASQQRRELKHGDVTYRVGDKVLQLVNQPDSNVFNGD
MGEIVSVFFAKENTEKQDMLVISFEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVT
RSKQFLILCGEEEAFQIGVNRNEDSIRQTNLQALLKEQLVDELEDPEVPFMKDANIGMENLTPYDFM

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=192259 BC359_RS04655 WP_078989252.1 907037..909400(+) (recD2) [Priestia flexa strain KLBMP 4941]
ATGAGTGAGGAAGTTCTAAACCCTTTACAACCCGATGAAGAAAAAACGTACATAAAAGGCACGGCAATTGTCACGGTCTT
TCATAATGAAGAAAATTTGTATAACGTAACAAGAATTAGAATAAAAGAAACAAATGTATCCATGGACGATAAAGAAGCGA
TTGTTACGGGATATTTCCCCCGTTTGAACGAAGATGAACTTTACACTTTTATTGGAAACTTTAAAGAGCATCCGAAATTT
GGCCTTCAGTTTCAAGTAGAGCAATTTAAAAAAGAGCTTCCCCAGTCAAAACAAGGGGTCATTCAGTACTTATCAAGTGA
TCTCTTTAACGGTATTGGTAAAAAAACCGCAGAAAATATTGTAGAAGCACTTGGTGAACGTGCAATTTATCGAATGCTAC
AAGACCCTGCGGTATTGAAAAAGGTGTCTAGGCTATCTGCTGATAAAGCAGAAAAGCTAATCGTTCAGCTGCGAGAGCAC
CAGGGGTTAGAAGAAGTAATGGTTAAGCTGACAGATTTGGGATTTGGTCCGCAGCTTTCCATGAAAATTTTCCAAGCTTA
TAAACAAGAGGCGCTAGAAGTGATTCAAACAAACCCCTATCAGCTTGTTGAAGATGTTCAAGGAATCGGCTTTAACCGAG
CGGATGAATTAGGAAGGAAGCTAGGGTTAGCAACCAACCATCCTAACCGGCTTCGAGCTGGAATTTTATACGTTATCGAG
CATGAATGCAATCAAATGGGACACGTCTACGTGAAAGCAGAGCAATTGTATCAGAAAACGGGAGAGCTGTTACAAAAAAG
TCGTCAAGAACCGTTATCAGAAATGGATATTATACGAGAGATTGATGCACTAAAAGAAGAGAAAAAAATTATTATTGATG
ACGATAAAATGTACTTCCCACCGCTTTTTTATGCTGAAAAAGGAGTCGTTAAAGCGATTGGTAAGCTAATGGCTCAAACA
GAGTATGAAGAGCAATTTCCTGAATCAGAATTTCTTCTAGCTCTAGGGGAGTTAGAAGAGCGTCTAGGCGTGCAGTATGC
ACCTTCGCAAAGAGAAGGAATTCAAAAAGCGCTTTTATCCCCAATGCTTTTGCTTACAGGAGGACCAGGTACCGGTAAAA
CAACAGTTATAAAGGGAATTGTTGAACTTTATGCAGAGCTTCATGGCTGTTCGCTAAATCCAGGGGATTATAAAAAAGAC
GAAGGATTTCCAGTGCTGCTTGTCGCTCCTACAGGTCGAGCTGCTAAACGGATGAGCGAGGCTACTGGACTGCCAGCGGT
GACAATCCACAGACTTTTAAAGTGGAATGGACAAGAAGGGTTTGACCACAATGAAGAAAATCCAATCAATGGTAAGTTAC
TGATTGTGGACGAGGTCTCTATGGTAGATTTATGGCTTGCTCACCAGCTCTTTAAATCACTTCCAGCTAGCATCCAAGTA
GTGCTTGTAGGTGATGAAGATCAATTACCTTCAGTTGGTCCTGGTCAGGTGTTGAAAGATTTATTACATTCTGAAGCTGT
TCCTACCGTACGATTAACAGATGTATATCGCCAAGAAGAAGGCTCATCTATCATTGATTTTGCTCATGAAATTAAAAAAG
GACGTCTTCCATCCGATTTGACTAATCAGCAAGGCGATCGTTCCTTTATTCGTTGTTACGGAGCGCAAATTACAGATGTT
GTCAAACAAGTGTGCGGCAATGCTGTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTGCTGGCTCCAATGTATAAAGG
TCCAGCGGGGATTGATAAAATGAATGAAGTACTGCAAGAATTATTTAATCCAGCCTCTCAACAGCGGAGAGAGTTAAAGC
ACGGAGATGTAACATATCGTGTAGGCGATAAGGTACTTCAGCTTGTAAATCAACCTGATAGTAATGTTTTTAATGGAGAT
ATGGGTGAGATTGTGTCTGTTTTTTTCGCAAAGGAAAACACGGAAAAGCAGGATATGCTTGTTATTTCATTCGAAGGAAA
TGAAGTAACCTATACGAAACAAGACTTTAATCAGATTACGCATGCGTACTGCTGCTCTATTCATAAATCACAAGGAAGCG
AGTTTCCGATTGTGGTGTTGCCTATTGTGAAAAGTTATTATCGCATGCTCCGACGGAACCTGCTTTATACTGCCGTTACG
CGGAGCAAGCAGTTCTTGATCTTATGTGGTGAAGAAGAAGCGTTTCAAATTGGCGTAAATCGTAACGAAGACAGCATTCG
ACAGACCAATCTACAAGCCCTTCTCAAAGAGCAATTAGTTGATGAGTTAGAAGATCCTGAGGTGCCATTTATGAAAGATG
CAAATATTGGCATGGAAAACCTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

64.751

99.492

0.644

Multiple sequence alignment