Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CA924_RS15555 Genome accession   NZ_CP021281
Coordinates   3421858..3424035 (+) Length   725 a.a.
NCBI ID   WP_015961864.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3416858..3429035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS15525 - 3417330..3417773 (-) 444 WP_011216694.1 hypothetical protein -
  CA924_RS15530 - 3417855..3418841 (+) 987 WP_015961860.1 tRNA-dihydrouridine synthase family protein -
  CA924_RS15535 - 3418900..3419259 (-) 360 WP_015961861.1 hypothetical protein -
  CA924_RS15540 - 3419316..3420071 (-) 756 WP_021437054.1 pteridine reductase -
  CA924_RS15545 - 3420248..3421360 (+) 1113 WP_015961863.1 SAM-dependent methyltransferase -
  CA924_RS15550 - 3421363..3421857 (+) 495 WP_011216699.1 6-carboxytetrahydropterin synthase -
  CA924_RS15555 priA 3421858..3424035 (+) 2178 WP_015961864.1 primosomal protein N' Machinery gene
  CA924_RS15560 - 3424032..3424424 (+) 393 WP_015961865.1 thioesterase family protein -
  CA924_RS15565 - 3424542..3424811 (-) 270 WP_013102003.1 hypothetical protein -
  CA924_RS15570 thyA 3424887..3425681 (-) 795 WP_015961866.1 thymidylate synthase -
  CA924_RS15575 lgt 3425678..3426448 (-) 771 WP_015961867.1 prolipoprotein diacylglyceryl transferase -
  CA924_RS15580 - 3426466..3427272 (-) 807 WP_015961868.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 81621.01 Da        Isoelectric Point: 9.2815

>NTDB_id=192259 CA924_RS15555 WP_015961864.1 3421858..3424035(+) (priA) [Legionella pneumophila subsp. pneumophila strain Flint]
MNDIYQVCIPHTNRDCFDYEALDLTPCIGGRVWVPFRNQARVGIVINKVCGQQTGHSLKKITSIIDEKPLVPEDLLELCL
WVGSYYQSPLSEVIPLVIPKKYRLGLPCSLPTEDFYQLNIPVEKAKTLISKKAKKQHELIDFLSRHQKGISKQTLKQHGY
NGNQIATLLACQAINLSQQVTLPTKIPEKLSPPLTLNPEQAVAVASILEHIHHYQCFLLQGVTGSGKTEVYLHVIAKILE
QGKQVLVLVPEIGLTPQLLSRFTARFNHPITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLPNLGLIIIDEEH
DSSLKQMEGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLIDLRSQMVQHGL
ALPTLKIIENHLLQQNQVLVFINRRGFAPVLLCHQCGWMVDCKACDSHLTLHKQAGQMICHHCGLTQRIPLFCNNCQSKE
LIPVGSGTQRIYEFLSHQFPDTNVLRIDRDEVRKKNSLNSHLDKINKGEAQLIIGTQMLAKGHHFPRLSLVVVVDADAGF
YNQDFRAIEHLGQLLTQVSGRAGRAEHPGQVLIQTYLPDHPLLNLLIQHGYDEFANALLISRQEAEMPPFQFLAVIRAQG
KTVNKVDQFLKATKDQIQAHPLTVLGPAPAPLPRKANQHRMQLLIKSPSRKVLKSSLTQLREWLTMNKLSNGIRWNVDVD
PMDLS

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=192259 CA924_RS15555 WP_015961864.1 3421858..3424035(+) (priA) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGAACGATATTTATCAAGTTTGTATCCCCCATACCAATCGAGATTGTTTTGATTACGAAGCCCTGGATTTAACTCCATG
CATTGGTGGAAGAGTATGGGTTCCTTTTCGCAATCAAGCCCGAGTGGGCATTGTAATCAATAAAGTTTGTGGCCAGCAAA
CGGGCCATTCGTTAAAGAAAATCACTTCAATAATCGATGAGAAACCTCTGGTTCCTGAAGATCTCTTAGAGCTTTGTCTA
TGGGTAGGAAGTTATTATCAGTCACCATTATCTGAAGTGATTCCTTTGGTAATACCCAAAAAATATCGCCTGGGTTTGCC
TTGCTCACTACCTACAGAAGATTTTTATCAATTGAATATCCCTGTTGAAAAGGCGAAGACACTCATCTCGAAAAAAGCAA
AAAAACAACATGAATTGATTGATTTTTTAAGCAGACACCAGAAAGGAATTTCCAAACAGACCCTAAAACAACATGGCTAC
AACGGAAATCAAATTGCGACACTACTTGCTTGTCAAGCCATTAACCTGTCACAGCAAGTTACCTTGCCAACCAAAATTCC
TGAAAAACTCAGTCCACCGTTAACACTCAATCCTGAACAAGCCGTTGCCGTAGCTTCCATTTTAGAACACATCCATCATT
ACCAATGCTTTTTACTGCAAGGTGTTACCGGAAGTGGTAAGACAGAGGTTTATTTGCATGTCATTGCCAAAATATTGGAG
CAAGGCAAACAAGTATTGGTGCTGGTACCAGAAATCGGGTTAACCCCTCAGCTTTTATCTCGTTTTACAGCCCGATTTAA
CCATCCCATAACCGTATTACATTCCAATTTGAATGAATCAGAAAGGCAAATTGCCTGGCAGCTGGCAAAAGAGAACAAAG
TTAAAATGGTGATTGGAACTCGTTCTGCCGTTTTTACCCCTCTGCCCAATCTCGGTTTAATTATCATCGATGAAGAGCAT
GACAGTTCGCTCAAACAAATGGAAGGGGTGCGTTATTCTGCGCGAGATACTGCTTTAATGCGTGCTCATCTTGCCAATAT
TCCTATCATTCTTGGTACAGCCACTCCCAGTCTGGAAACCATCCACAACTGCAAACAAAAAAAATATAATTTATTACGCT
TAACGCATAAAGCTGCCTCCACTACACCATTACACTATCAACTGATTGATTTAAGATCGCAAATGGTACAGCATGGCTTG
GCTCTCCCAACCCTTAAAATCATAGAAAATCATTTGCTGCAACAAAACCAGGTTCTTGTTTTCATTAACCGACGCGGCTT
TGCCCCAGTGTTACTTTGCCATCAATGTGGATGGATGGTTGATTGCAAAGCATGCGATAGCCATTTAACCTTGCATAAAC
AGGCAGGACAAATGATTTGTCATCATTGCGGATTAACCCAAAGAATACCTTTGTTTTGCAATAACTGCCAAAGCAAGGAA
TTAATCCCCGTAGGATCTGGCACCCAGAGAATTTATGAGTTTTTAAGCCATCAGTTTCCAGATACAAATGTTTTACGAAT
TGACCGAGATGAGGTTCGTAAAAAAAATTCTCTAAACAGCCATTTGGACAAAATTAATAAAGGGGAAGCTCAGCTGATCA
TAGGCACTCAAATGCTAGCCAAGGGGCACCATTTCCCCCGCCTATCCCTGGTCGTTGTCGTAGATGCTGATGCAGGCTTT
TACAACCAGGATTTCCGGGCTATTGAACATTTGGGACAATTATTAACTCAAGTATCTGGACGAGCTGGGCGAGCAGAACA
TCCCGGGCAAGTATTGATTCAAACTTATTTACCTGATCATCCCCTGCTTAATCTACTCATTCAGCATGGGTATGATGAAT
TTGCAAACGCTTTATTAATTTCAAGACAAGAGGCTGAAATGCCCCCTTTTCAGTTTTTAGCGGTCATCAGAGCTCAGGGC
AAAACCGTCAACAAGGTGGATCAATTCCTAAAAGCAACCAAAGATCAAATTCAGGCTCATCCTCTCACGGTACTGGGTCC
TGCGCCAGCTCCTTTGCCACGAAAAGCTAACCAGCATAGGATGCAACTATTAATTAAATCCCCTTCAAGAAAAGTTCTAA
AAAGTTCATTGACGCAATTAAGAGAGTGGTTGACAATGAACAAATTAAGTAATGGCATCCGCTGGAATGTGGACGTTGAT
CCTATGGACTTATCATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(489-585)

3DNA-binding domain (3BD) (PriA_3primeBD)

(6-99)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(442-468)

Primosomal protein N C-terminal domain (PriA_C)

(629-721)

Type III restriction enzyme, res subunit (ResIII)

(195-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

42.355

100

0.432

Multiple sequence alignment