Detailed information NTG0192230

Bioinformatically predicted

Overview

• Name: rcrP
• Type: Regulator
• Locus tag: BEN51_RS07420
• Genome accession: NZ_CP016786
• Coordinates: 1560316..1562106 (-)
• Length: 596 a.a.
• NCBI ID: WP_119865442.1
• Uniprot ID: A0A343JCP8
• Organism: Clostridium isatidis strain DSM 15098
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1553047..1569364	1560316..1562106	within	0

Gene organization within MGE regions

Location: 1553047..1569364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN51_RS07390 (BEN51_07340)	uvsE	1553047..1554024 (-)	978	WP_119866592.1	UV DNA damage repair endonuclease UvsE	-
BEN51_RS07395 (BEN51_07345)	sstT	1554240..1555481 (-)	1242	WP_119865438.1	serine/threonine transporter SstT	-
BEN51_RS07400 (BEN51_07350)	-	1556061..1557164 (+)	1104	WP_119865439.1	ABC transporter permease	-
BEN51_RS07405 (BEN51_07355)	-	1557164..1557862 (+)	699	WP_119865440.1	ABC transporter ATP-binding protein	-
BEN51_RS14160	-	1558240..1558326 (-)	87	Protein_1467	IS200/IS605 family transposase	-
BEN51_RS07415 (BEN51_07360)	rcrQ	1558527..1560323 (-)	1797	WP_119865441.1	ABC transporter ATP-binding protein	Regulator
BEN51_RS07420 (BEN51_07365)	rcrP	1560316..1562106 (-)	1791	WP_119865442.1	ABC transporter ATP-binding protein	Regulator
BEN51_RS07425 (BEN51_07370)	-	1562205..1562639 (-)	435	WP_164704094.1	MarR family winged helix-turn-helix transcriptional regulator	-
BEN51_RS07430 (BEN51_07375)	-	1562875..1563396 (+)	522	WP_236906192.1	hypothetical protein	-
BEN51_RS07435 (BEN51_07380)	-	1563444..1563842 (-)	399	WP_119866594.1	bacteriohemerythrin	-
BEN51_RS07440 (BEN51_07385)	-	1563991..1564713 (-)	723	WP_119865444.1	glycerophosphodiester phosphodiesterase	-
BEN51_RS07445 (BEN51_07390)	-	1564820..1565005 (-)	186	WP_123962167.1	hypothetical protein	-
BEN51_RS13815	-	1565582..1565737 (-)	156	WP_164704095.1	hypothetical protein	-
BEN51_RS07450 (BEN51_07395)	-	1565987..1566166 (-)	180	WP_119865446.1	zinc-ribbon domain-containing protein	-
BEN51_RS07455 (BEN51_07400)	-	1566516..1567166 (+)	651	WP_119865447.1	DNA alkylation repair protein	-
BEN51_RS07460 (BEN51_07405)	-	1567318..1568370 (-)	1053	WP_119865448.1	cell division protein FtsZ	-
BEN51_RS07465 (BEN51_07410)	-	1568555..1569364 (+)	810	WP_119865449.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 596 a.a.
• Molecular weight: 66461.29 Da
• Isoelectric Point: 8.4659

>NTDB_id=192230 BEN51_RS07420 WP_119865442.1 1560316..1562106(-) (rcrP) [Clostridium isatidis strain DSM 15098]
MIKLLKYLKSKDWIFIFISLLFIVCQVWLDLKLPDYMSDITALIQTPNAEMIEIWKAGGKMLVCALGSLIASVIVGYFIS
GIAAGLSKTLRSNIFRKVESFSMHEINQFSVPSLITRSTNDITQVQMIIAMGLQVLIKAPITAVWALGKISSTSWQWTTA
TAVAVVALLIVVSGSFLLALPKFKIIQTLTDNLNKVARENLTGIRVVRAYNAEKYQEDKFEKANDEITKTNLFTGRVMGI
LMPFIQIIMSGLSLSIYWIGAYLINDVSIQNPADVVNRFSVFSDMVVFSSYAIQVVIAFMMLVIVFIMLPRAQVAANRIN
EVLDTPLTIINGTRKSDEEAQVGEIEFKNVYFKYPDAESSTDYVLENINFKVNKGETIAFIGATGSGKSTLINLIPRFYD
VTSGEVLVNGVNVKEYDKNYLTNKIGYVSQRTVMFSGTVESNVSYGDNGKEKLGIDAVKRAVEIAQGKDFVEKLEKQYES
EVAQGGTNLSGGQKQRLSIARAIHRDPEIYIFDDSFSALDYRTDKVLRAVLNKETKGKTKLIVAQRIGTIKDADKIVVLD
EGKIVGIGKHKELLKTCEVYREIAYSQLSKEELENE

Nucleotide

• Length: 1791 bp

>NTDB_id=192230 BEN51_RS07420 WP_119865442.1 1560316..1562106(-) (rcrP) [Clostridium isatidis strain DSM 15098]
ATGATAAAACTGTTGAAATATTTAAAGTCAAAGGATTGGATTTTTATTTTTATAAGTTTACTATTTATAGTATGTCAAGT
ATGGTTAGATTTAAAACTACCTGACTATATGTCAGATATAACAGCTTTAATTCAAACTCCAAATGCCGAAATGATTGAAA
TTTGGAAGGCTGGAGGCAAAATGCTTGTTTGTGCTTTAGGAAGTTTAATAGCCAGTGTTATAGTTGGATATTTTATTTCA
GGTATAGCGGCAGGCCTTTCAAAGACCTTACGTTCTAATATCTTTAGAAAAGTAGAAAGCTTTTCAATGCATGAAATTAA
TCAGTTTTCAGTTCCAAGCTTAATAACTCGTTCAACAAATGATATAACTCAAGTGCAAATGATAATAGCTATGGGTCTTC
AAGTATTAATAAAAGCTCCAATTACAGCTGTTTGGGCCCTAGGTAAAATATCAAGTACGAGTTGGCAATGGACAACAGCA
ACAGCGGTAGCAGTAGTAGCATTATTAATAGTTGTATCTGGATCATTCTTATTAGCATTACCAAAGTTTAAGATAATTCA
AACTTTAACTGATAATTTAAATAAAGTGGCTAGAGAAAATTTAACTGGTATTAGAGTTGTTAGAGCCTATAACGCAGAAA
AATATCAAGAAGATAAATTTGAAAAAGCAAACGATGAAATAACAAAGACAAACTTATTCACAGGAAGAGTAATGGGGATA
CTAATGCCTTTTATTCAAATAATAATGAGCGGTCTTAGTTTATCAATATATTGGATAGGTGCTTACTTAATAAATGATGT
ATCTATACAGAATCCAGCTGATGTTGTTAATAGATTTTCAGTATTTAGTGATATGGTTGTATTCTCATCTTATGCAATAC
AAGTTGTTATAGCATTTATGATGCTGGTTATAGTATTTATAATGCTTCCAAGAGCGCAAGTTGCTGCAAATCGTATTAAT
GAAGTTTTAGATACTCCTCTTACAATAATTAATGGAACTCGTAAATCAGATGAAGAGGCTCAGGTTGGAGAAATTGAATT
CAAAAATGTATACTTTAAATATCCTGATGCAGAAAGTTCAACTGATTATGTATTAGAAAATATAAACTTTAAGGTTAATA
AGGGAGAAACTATTGCATTTATTGGAGCTACTGGTTCTGGAAAATCAACATTAATTAATTTAATTCCAAGATTTTATGAT
GTAACTTCAGGAGAAGTATTAGTCAATGGAGTTAATGTTAAAGAATATGATAAAAATTATTTAACAAATAAAATAGGATA
TGTTTCACAAAGGACAGTAATGTTTAGTGGAACTGTAGAATCAAATGTTTCTTATGGAGATAATGGAAAAGAAAAATTAG
GAATAGATGCTGTTAAGAGAGCTGTTGAAATTGCTCAAGGTAAAGACTTTGTTGAAAAACTTGAAAAGCAATATGAAAGT
GAAGTAGCTCAAGGAGGAACAAATCTTTCTGGAGGACAAAAACAAAGACTTTCAATAGCTAGAGCTATTCATAGAGATCC
AGAAATTTATATTTTTGACGATTCCTTCTCAGCTTTAGACTATAGAACTGATAAAGTTTTAAGAGCAGTCTTAAATAAGG
AAACTAAAGGAAAGACTAAACTTATAGTAGCCCAAAGAATAGGAACAATTAAGGATGCTGATAAGATAGTTGTTTTAGAT
GAAGGAAAGATCGTTGGAATAGGAAAACATAAGGAACTTCTAAAGACTTGTGAGGTATATAGAGAAATAGCATACTCACA
ACTTTCAAAGGAGGAACTTGAAAATGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (19-270)

• ABC transporter (ABC_tran) (365-515)

3D structure

• AlphaFold DB: A0A343JCP8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrP	Streptococcus mutans UA159	52.579	100	0.53