Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BEN51_RS07420 Genome accession   NZ_CP016786
Coordinates   1560316..1562106 (-) Length   596 a.a.
NCBI ID   WP_119865442.1    Uniprot ID   A0A343JCP8
Organism   Clostridium isatidis strain DSM 15098     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555316..1567106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN51_RS07400 (BEN51_07350) - 1556061..1557164 (+) 1104 WP_119865439.1 ABC transporter permease -
  BEN51_RS07405 (BEN51_07355) - 1557164..1557862 (+) 699 WP_119865440.1 ABC transporter ATP-binding protein -
  BEN51_RS14160 - 1558240..1558326 (-) 87 Protein_1467 IS200/IS605 family transposase -
  BEN51_RS07415 (BEN51_07360) rcrQ 1558527..1560323 (-) 1797 WP_119865441.1 ABC transporter ATP-binding protein Regulator
  BEN51_RS07420 (BEN51_07365) rcrP 1560316..1562106 (-) 1791 WP_119865442.1 ABC transporter ATP-binding protein Regulator
  BEN51_RS07425 (BEN51_07370) - 1562205..1562639 (-) 435 WP_164704094.1 MarR family winged helix-turn-helix transcriptional regulator -
  BEN51_RS07430 (BEN51_07375) - 1562875..1563396 (+) 522 WP_236906192.1 hypothetical protein -
  BEN51_RS07435 (BEN51_07380) - 1563444..1563842 (-) 399 WP_119866594.1 bacteriohemerythrin -
  BEN51_RS07440 (BEN51_07385) - 1563991..1564713 (-) 723 WP_119865444.1 glycerophosphodiester phosphodiesterase -
  BEN51_RS07445 (BEN51_07390) - 1564820..1565005 (-) 186 WP_123962167.1 hypothetical protein -
  BEN51_RS13815 - 1565582..1565737 (-) 156 WP_164704095.1 hypothetical protein -
  BEN51_RS07450 (BEN51_07395) - 1565987..1566166 (-) 180 WP_119865446.1 zinc-ribbon domain-containing protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 66461.29 Da        Isoelectric Point: 8.4659

>NTDB_id=192230 BEN51_RS07420 WP_119865442.1 1560316..1562106(-) (rcrP) [Clostridium isatidis strain DSM 15098]
MIKLLKYLKSKDWIFIFISLLFIVCQVWLDLKLPDYMSDITALIQTPNAEMIEIWKAGGKMLVCALGSLIASVIVGYFIS
GIAAGLSKTLRSNIFRKVESFSMHEINQFSVPSLITRSTNDITQVQMIIAMGLQVLIKAPITAVWALGKISSTSWQWTTA
TAVAVVALLIVVSGSFLLALPKFKIIQTLTDNLNKVARENLTGIRVVRAYNAEKYQEDKFEKANDEITKTNLFTGRVMGI
LMPFIQIIMSGLSLSIYWIGAYLINDVSIQNPADVVNRFSVFSDMVVFSSYAIQVVIAFMMLVIVFIMLPRAQVAANRIN
EVLDTPLTIINGTRKSDEEAQVGEIEFKNVYFKYPDAESSTDYVLENINFKVNKGETIAFIGATGSGKSTLINLIPRFYD
VTSGEVLVNGVNVKEYDKNYLTNKIGYVSQRTVMFSGTVESNVSYGDNGKEKLGIDAVKRAVEIAQGKDFVEKLEKQYES
EVAQGGTNLSGGQKQRLSIARAIHRDPEIYIFDDSFSALDYRTDKVLRAVLNKETKGKTKLIVAQRIGTIKDADKIVVLD
EGKIVGIGKHKELLKTCEVYREIAYSQLSKEELENE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=192230 BEN51_RS07420 WP_119865442.1 1560316..1562106(-) (rcrP) [Clostridium isatidis strain DSM 15098]
ATGATAAAACTGTTGAAATATTTAAAGTCAAAGGATTGGATTTTTATTTTTATAAGTTTACTATTTATAGTATGTCAAGT
ATGGTTAGATTTAAAACTACCTGACTATATGTCAGATATAACAGCTTTAATTCAAACTCCAAATGCCGAAATGATTGAAA
TTTGGAAGGCTGGAGGCAAAATGCTTGTTTGTGCTTTAGGAAGTTTAATAGCCAGTGTTATAGTTGGATATTTTATTTCA
GGTATAGCGGCAGGCCTTTCAAAGACCTTACGTTCTAATATCTTTAGAAAAGTAGAAAGCTTTTCAATGCATGAAATTAA
TCAGTTTTCAGTTCCAAGCTTAATAACTCGTTCAACAAATGATATAACTCAAGTGCAAATGATAATAGCTATGGGTCTTC
AAGTATTAATAAAAGCTCCAATTACAGCTGTTTGGGCCCTAGGTAAAATATCAAGTACGAGTTGGCAATGGACAACAGCA
ACAGCGGTAGCAGTAGTAGCATTATTAATAGTTGTATCTGGATCATTCTTATTAGCATTACCAAAGTTTAAGATAATTCA
AACTTTAACTGATAATTTAAATAAAGTGGCTAGAGAAAATTTAACTGGTATTAGAGTTGTTAGAGCCTATAACGCAGAAA
AATATCAAGAAGATAAATTTGAAAAAGCAAACGATGAAATAACAAAGACAAACTTATTCACAGGAAGAGTAATGGGGATA
CTAATGCCTTTTATTCAAATAATAATGAGCGGTCTTAGTTTATCAATATATTGGATAGGTGCTTACTTAATAAATGATGT
ATCTATACAGAATCCAGCTGATGTTGTTAATAGATTTTCAGTATTTAGTGATATGGTTGTATTCTCATCTTATGCAATAC
AAGTTGTTATAGCATTTATGATGCTGGTTATAGTATTTATAATGCTTCCAAGAGCGCAAGTTGCTGCAAATCGTATTAAT
GAAGTTTTAGATACTCCTCTTACAATAATTAATGGAACTCGTAAATCAGATGAAGAGGCTCAGGTTGGAGAAATTGAATT
CAAAAATGTATACTTTAAATATCCTGATGCAGAAAGTTCAACTGATTATGTATTAGAAAATATAAACTTTAAGGTTAATA
AGGGAGAAACTATTGCATTTATTGGAGCTACTGGTTCTGGAAAATCAACATTAATTAATTTAATTCCAAGATTTTATGAT
GTAACTTCAGGAGAAGTATTAGTCAATGGAGTTAATGTTAAAGAATATGATAAAAATTATTTAACAAATAAAATAGGATA
TGTTTCACAAAGGACAGTAATGTTTAGTGGAACTGTAGAATCAAATGTTTCTTATGGAGATAATGGAAAAGAAAAATTAG
GAATAGATGCTGTTAAGAGAGCTGTTGAAATTGCTCAAGGTAAAGACTTTGTTGAAAAACTTGAAAAGCAATATGAAAGT
GAAGTAGCTCAAGGAGGAACAAATCTTTCTGGAGGACAAAAACAAAGACTTTCAATAGCTAGAGCTATTCATAGAGATCC
AGAAATTTATATTTTTGACGATTCCTTCTCAGCTTTAGACTATAGAACTGATAAAGTTTTAAGAGCAGTCTTAAATAAGG
AAACTAAAGGAAAGACTAAACTTATAGTAGCCCAAAGAATAGGAACAATTAAGGATGCTGATAAGATAGTTGTTTTAGAT
GAAGGAAAGATCGTTGGAATAGGAAAACATAAGGAACTTCTAAAGACTTGTGAGGTATATAGAGAAATAGCATACTCACA
ACTTTCAAAGGAGGAACTTGAAAATGAGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-270)

ABC transporter (ABC_tran)

(365-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.579

100

0.53

Multiple sequence alignment