Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BEN31_RS08220 Genome accession   NZ_CP016784
Coordinates   1558727..1559506 (-) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus pumilus strain PDSLzg-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553727..1564506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS08190 (BEN31_08190) fliH 1553842..1554606 (-) 765 WP_066030912.1 flagellar assembly protein FliH -
  BEN31_RS08195 (BEN31_08195) fliG 1554599..1555615 (-) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  BEN31_RS08200 (BEN31_08200) fliF 1555627..1557219 (-) 1593 WP_066030913.1 flagellar basal-body MS-ring/collar protein FliF -
  BEN31_RS08205 (BEN31_08205) fliE 1557269..1557586 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  BEN31_RS08210 (BEN31_08210) flgC 1557598..1558050 (-) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  BEN31_RS08215 (BEN31_08215) flgB 1558050..1558439 (-) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  BEN31_RS08220 (BEN31_08220) codY 1558727..1559506 (-) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BEN31_RS08225 (BEN31_08225) hslU 1559541..1560941 (-) 1401 WP_066030914.1 HslU--HslV peptidase ATPase subunit -
  BEN31_RS08230 (BEN31_08230) hslV 1560958..1561503 (-) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  BEN31_RS08235 (BEN31_08235) xerC 1561518..1562435 (-) 918 WP_060596252.1 tyrosine recombinase XerC -
  BEN31_RS08240 (BEN31_08240) trmFO 1562498..1563802 (-) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=192178 BEN31_RS08220 WP_012009951.1 1558727..1559506(-) (codY) [Bacillus pumilus strain PDSLzg-1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=192178 BEN31_RS08220 WP_012009951.1 1558727..1559506(-) (codY) [Bacillus pumilus strain PDSLzg-1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAATAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGCACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCCGTTGTCCAAATGGCGATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment