Detailed information NTG0192166

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BEN31_RS04040
• Genome accession: NZ_CP016784
• Coordinates: 756103..758487 (+)
• Length: 794 a.a.
• NCBI ID: WP_066030604.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain PDSLzg-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 751103..763487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN31_RS04015 (BEN31_04015)	-	751103..752368 (-)	1266	WP_066030603.1	replication-associated recombination protein A	-
BEN31_RS04020 (BEN31_04020)	cymR	752575..752994 (+)	420	WP_012010726.1	cysteine metabolism transcriptional regulator CymR	-
BEN31_RS04025 (BEN31_04025)	-	753013..754155 (+)	1143	WP_060596863.1	cysteine desulfurase family protein	-
BEN31_RS04030 (BEN31_04030)	mnmA	754251..755369 (+)	1119	WP_034661519.1	tRNA 2-thiouridine(34) synthase MnmA	-
BEN31_RS04035 (BEN31_04035)	-	755430..756083 (+)	654	WP_034661516.1	tetratricopeptide repeat protein	-
BEN31_RS04040 (BEN31_04040)	recD2	756103..758487 (+)	2385	WP_066030604.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BEN31_RS04045 (BEN31_04045)	-	758622..759080 (+)	459	WP_034662034.1	PRC-barrel domain-containing protein	-
BEN31_RS04050 (BEN31_04050)	-	759094..759285 (+)	192	WP_003216308.1	hypothetical protein	-
BEN31_RS04055 (BEN31_04055)	-	759306..759437 (+)	132	WP_003216198.1	YrzQ family protein	-
BEN31_RS04060 (BEN31_04060)	-	759473..760123 (-)	651	WP_060596860.1	amino acid ABC transporter permease	-
BEN31_RS04065 (BEN31_04065)	-	760139..760792 (-)	654	WP_060596859.1	amino acid ABC transporter permease	-
BEN31_RS04070 (BEN31_04070)	-	760873..761682 (-)	810	WP_066030605.1	transporter substrate-binding domain-containing protein	-
BEN31_RS04075 (BEN31_04075)	-	761696..762424 (-)	729	WP_034661507.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89109.60 Da
• Isoelectric Point: 5.2082

>NTDB_id=192166 BEN31_RS04040 WP_066030604.1 756103..758487(+) (recD2) [Bacillus pumilus strain PDSLzg-1]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHIWNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLMQTDEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=192166 BEN31_RS04040 WP_066030604.1 756103..758487(+) (recD2) [Bacillus pumilus strain PDSLzg-1]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGTAAAGTCACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTACCGACAACGAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGGAAAAAGACGGCGGAAGAAATTGTGGGGCAGCTTGGCAATCAGACGCTTCATAAAATTATGCGTGACC
CAGCTGTTTTGTATGATGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCTGCAGCGCTCCAGGAACATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTCAGCATGAAGATATACCAAGTGTACGAGAG
TGAAACGCTGCAAAAGATTGAGGAAAACCCGTATCAGCTCGTCAAGGATGTCGAAGGGATCGGATTTATTAAGGCGGATG
AGCTTGGCGCTAGAACCGGCATCTCAGGAAATGACCCAGAGCGAATCCGTGCAGCCCTGCTTTATACAGTCGAAACAGCA
AGTCTTCAGGACGGTCATACGTACATACAAACGAAAGATTTGATCGTTGAAACCCGCAAGCTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGATGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGAATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTCCCTGAATCAGAATTCCTGCTCGCACTTGGGGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CGGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTAAC
CATTCACCGTTTGCTCGGCTGGAACGGATCAGAGGGCTTTTCGCATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTGGATATTTGGCTTGCGAATCACTTGTTTAAAGCGATTCCTGATCATATCCAAGTGATC
ATGGTAGGAGATGAACATCAGCTTCCATCTGTCGGACCAGGCCAAGTGTTAAGGGATTTACTTGCCTCACAAGCCGTACC
AGCTGTTACACTGACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAAGATATTACCGCACGTTCAAAGGATCGATCTTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCAAAAGACATTCAAGTGCTTGCGCCAATGTATAAAGGGAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTGGAATCCAAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAAAATAATATTTTTAACGGTGATATC
GGCGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACCTTTACAAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCACAAATCACAAGGCAGTGAAT
TCCCAATCGTTGTGCTGCCAGTCGTGAGAAGCTACTACAGAATGCTGCGGCGAAATCTGCTGTACACAGCTATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGTGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTGATGCAAACTGATGAAGTTATGGATGCGGAGCTTGCAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.874	100	0.8