Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABE41_RS13550 Genome accession   NZ_CP016761
Coordinates   2612599..2614929 (-) Length   776 a.a.
NCBI ID   WP_066291265.1    Uniprot ID   A0A1B1Z6H6
Organism   Fictibacillus arsenicus strain G25-54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2607599..2619929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE41_RS13530 (ABE41_013530) alaS 2607740..2610376 (-) 2637 WP_066291258.1 alanine--tRNA ligase -
  ABE41_RS13535 (ABE41_013535) - 2610899..2611984 (-) 1086 WP_066291259.1 AI-2E family transporter -
  ABE41_RS13540 (ABE41_013540) - 2612038..2612217 (-) 180 WP_066291262.1 YrzQ family protein -
  ABE41_RS13545 (ABE41_013545) - 2612251..2612448 (-) 198 WP_066291264.1 hypothetical protein -
  ABE41_RS13550 (ABE41_013550) recD2 2612599..2614929 (-) 2331 WP_066291265.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABE41_RS13555 (ABE41_013555) - 2614943..2615602 (-) 660 WP_066291267.1 tetratricopeptide repeat protein -
  ABE41_RS13560 (ABE41_013560) mnmA 2615798..2616925 (-) 1128 WP_066291270.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABE41_RS13565 (ABE41_013565) - 2616965..2618104 (-) 1140 WP_066291272.1 cysteine desulfurase family protein -
  ABE41_RS13570 (ABE41_013570) - 2618119..2618538 (-) 420 WP_066291274.1 Rrf2 family transcriptional regulator -
  ABE41_RS13575 (ABE41_013575) - 2618471..2619181 (-) 711 WP_066291276.1 YitT family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 88720.38 Da        Isoelectric Point: 5.4358

>NTDB_id=191974 ABE41_RS13550 WP_066291265.1 2612599..2614929(-) (recD2) [Fictibacillus arsenicus strain G25-54]
MAQQPSFNLEDETSQSSRYIKGTLISTVYHQSESLYTVARVRIKETNENYDEKEVMITGILPPLREDELYLFYGRFKDHP
KYGKQYEVEYFNKEMPQSKEATIQYLSSDLFKGIGKKTAEHIVEVMGDDAITKLLESPEYISQIPKLTEEQAKNLHEALL
QNRGLDQVMMAVQPYGIGPQLALKIFQTYQDEAVSVVKGEPYRLIEDIPGIGFYRADEIAKGNGMQVNHPERIQAACQFL
LRDQGTDLGHSYLPVEELLAGVRKLLADGKNTVDEMSIFREIQDMEADKRLILKENVVYLPSLYFAERGFAQKINHLLQS
QKTDYDIPVEQIENELEKLEKRLNIKYANSQKQAIKKALTSSVMVLTGGPGTGKTTVIKGIVELYSEIHGVSLNIEDYRG
KKEPFPVLLVAPTGRAAKRMTESTGIPAHTIHRLLGWRGAGHFEKNEDVPIEGKLLIVDEMSMVDIWLAYSLSKALPEHI
QIIFVGDEDQLPSVGPGQVLKDLLESEHIPQTRLIDIYRQSEGSSIIRLAHEMKKGNLPQDLLIPQKDRRFFSCSGEQVF
QAIIQVCENAIKKGYTSRDIQVLAPMYKGPVGIDRLNMELQRLFNPEKQKQRQLQVANVFYRKGDKVLQLVNQPEDNVFN
GDIGEIVAVIYARENTDKEDQIVICFDEIEVTYERSEFHNFTHAFCCSIHKSQGSEYPIVILPIVKSYYRMLKRNLIYTA
ITRSKEYLILCGEQEAFSWAVQRSDESERYSGLKLRLQETLLEKDFMNDTLFNETN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=191974 ABE41_RS13550 WP_066291265.1 2612599..2614929(-) (recD2) [Fictibacillus arsenicus strain G25-54]
ATGGCACAGCAGCCTTCCTTTAACTTAGAGGATGAAACGTCTCAATCATCCCGTTATATAAAAGGGACATTGATTTCCAC
CGTATATCATCAATCTGAAAGCCTTTATACAGTAGCAAGGGTGAGAATTAAAGAGACAAATGAAAATTATGATGAAAAAG
AAGTCATGATAACAGGCATACTTCCTCCGTTAAGGGAGGATGAACTCTACCTGTTTTATGGCAGATTTAAAGACCACCCC
AAATATGGGAAGCAGTATGAGGTTGAATATTTTAATAAAGAAATGCCGCAATCCAAGGAAGCGACGATTCAATATTTATC
AAGCGACTTGTTTAAAGGAATCGGCAAGAAAACTGCTGAGCATATCGTAGAGGTTATGGGTGACGATGCGATCACGAAGC
TCTTAGAATCTCCAGAATACATCAGCCAGATACCAAAGTTAACAGAAGAACAAGCTAAAAATTTGCATGAAGCACTGCTT
CAAAACAGAGGATTGGATCAGGTTATGATGGCTGTCCAGCCATATGGAATCGGTCCTCAGCTTGCTTTAAAGATCTTTCA
AACATACCAGGATGAAGCAGTCTCTGTTGTTAAAGGCGAACCTTACCGGCTTATTGAAGATATACCGGGTATTGGCTTTT
ACAGGGCAGATGAAATCGCAAAAGGCAATGGCATGCAAGTAAATCATCCTGAACGGATTCAGGCAGCCTGTCAATTTCTT
TTAAGAGATCAAGGTACTGATCTGGGACATTCTTATCTACCAGTTGAGGAACTTCTAGCAGGGGTCAGAAAGCTTTTGGC
TGATGGGAAAAATACTGTTGATGAGATGAGTATTTTCAGGGAAATTCAAGACATGGAAGCTGATAAGCGGCTGATATTAA
AAGAAAATGTTGTCTATTTGCCTTCTCTTTATTTTGCTGAACGAGGATTTGCTCAAAAAATCAATCATTTATTGCAAAGC
CAAAAAACAGATTATGATATCCCAGTTGAGCAAATTGAAAACGAACTTGAAAAATTAGAAAAAAGGCTGAATATCAAATA
TGCTAACAGTCAAAAGCAAGCCATTAAAAAAGCGTTAACTTCCTCAGTTATGGTGCTCACTGGCGGTCCCGGTACAGGTA
AAACCACCGTAATCAAGGGAATCGTAGAACTTTATAGTGAAATACATGGAGTAAGTCTAAACATAGAAGATTATCGCGGA
AAAAAGGAACCATTTCCTGTATTGCTTGTTGCGCCAACAGGTCGTGCTGCAAAACGCATGACTGAATCCACAGGTATTCC
GGCTCATACTATTCACCGTCTTTTGGGATGGAGAGGCGCAGGACACTTTGAAAAAAATGAAGATGTGCCAATAGAAGGAA
AGCTGTTAATTGTAGATGAAATGTCGATGGTTGATATTTGGCTTGCCTACTCACTTTCAAAAGCACTTCCTGAGCATATC
CAAATTATTTTTGTGGGAGATGAAGATCAGCTTCCTTCTGTAGGACCAGGTCAAGTGTTAAAGGATCTCCTCGAATCAGA
ACACATTCCGCAAACACGATTGATTGATATTTACAGACAGTCTGAAGGTTCTTCAATTATTCGTTTAGCACATGAGATGA
AAAAGGGGAATCTTCCGCAAGACTTGCTGATTCCTCAAAAAGACAGGCGCTTTTTTTCTTGTTCAGGAGAGCAGGTTTTT
CAAGCCATCATTCAAGTTTGTGAAAATGCGATAAAAAAAGGGTATACTTCGAGAGATATTCAAGTGCTTGCCCCTATGTA
TAAAGGTCCAGTAGGAATCGACCGGTTAAATATGGAACTGCAGCGTTTATTTAATCCAGAAAAGCAAAAACAGCGGCAGC
TGCAAGTTGCTAATGTATTTTACCGAAAAGGGGATAAGGTGCTGCAGCTTGTAAATCAGCCTGAAGATAACGTTTTTAAC
GGGGATATAGGGGAAATCGTTGCAGTTATTTATGCGAGGGAGAATACAGACAAAGAAGATCAGATTGTGATTTGCTTTGA
TGAAATTGAAGTAACGTATGAAAGAAGTGAATTTCACAATTTCACACACGCTTTTTGCTGTTCCATACATAAATCTCAAG
GCAGTGAATATCCGATTGTCATTCTTCCCATTGTGAAAAGCTATTATAGAATGCTTAAACGCAACCTGATTTATACAGCT
ATTACGAGAAGTAAAGAATATCTTATTTTATGCGGAGAACAAGAGGCATTTTCTTGGGCAGTACAGCGCTCTGACGAATC
AGAAAGGTATTCGGGCCTTAAGCTTCGGCTGCAAGAAACCTTACTGGAAAAAGATTTTATGAATGATACGCTCTTTAACG
AAACAAACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(162-252)

AAA domain (AAA_30)

(347-540)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(596-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1Z6H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.666

99.098

0.522

Multiple sequence alignment