Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L58_RS09160 Genome accession   NZ_CP016682
Coordinates   1763304..1763900 (-) Length   198 a.a.
NCBI ID   WP_002258539.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M24705     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758304..1768900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L58_RS09135 (A6L58_09135) dut 1758399..1758851 (-) 453 WP_002258542.1 dUTP diphosphatase -
  A6L58_RS09140 (A6L58_09140) - 1758996..1759424 (+) 429 Protein_1687 AzlC family ABC transporter permease -
  A6L58_RS13025 - 1760305..1761056 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L58_RS09155 (A6L58_09155) pilX 1762826..1763299 (-) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L58_RS09160 (A6L58_09160) pilK 1763304..1763900 (-) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L58_RS09165 (A6L58_09165) pilJ 1763879..1764820 (-) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L58_RS09170 (A6L58_09170) pilV 1764817..1765431 (-) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L58_RS09175 (A6L58_09175) pilH 1765461..1766126 (-) 666 WP_002258536.1 GspH/FimT family pseudopilin Machinery gene
  A6L58_RS09180 (A6L58_09180) dnaB 1766435..1767841 (-) 1407 WP_002220671.1 replicative DNA helicase -
  A6L58_RS09185 (A6L58_09185) - 1768004..1768591 (+) 588 WP_002258535.1 superoxide dismutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21830.74 Da        Isoelectric Point: 5.3906

>NTDB_id=191730 A6L58_RS09160 WP_002258539.1 1763304..1763900(-) (pilK) [Neisseria meningitidis strain M24705]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQDNPTVEAVKRSCPANSTDLCIDKKGMKYKKGTRSVSEMPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=191730 A6L58_RS09160 WP_002258539.1 1763304..1763900(-) (pilK) [Neisseria meningitidis strain M24705]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGACAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCGAAATGCCACGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.139

100

0.879

Multiple sequence alignment