Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L95_RS04890 Genome accession   NZ_CP016677
Coordinates   919333..920010 (+) Length   225 a.a.
NCBI ID   WP_002248272.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25456     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 914333..925010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L95_RS14670 - 915125..915232 (+) 108 Protein_920 IS5/IS1182 family transposase -
  A6L95_RS04870 (A6L95_04870) - 915277..915609 (+) 333 WP_002226445.1 hypothetical protein -
  A6L95_RS04875 (A6L95_04875) - 915941..916450 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L95_RS04880 (A6L95_04880) - 917022..917609 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L95_RS04885 (A6L95_04885) dnaB 917772..919178 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L95_RS04890 (A6L95_04890) pilH 919333..920010 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L95_RS04895 (A6L95_04895) pilV 920034..920645 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L95_RS04900 (A6L95_04900) pilJ 920642..921580 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L95_RS04905 (A6L95_04905) pilK 921559..922152 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L95_RS04910 (A6L95_04910) pilX 922157..922630 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L95_RS04915 (A6L95_04915) - 924534..924962 (-) 429 Protein_930 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25328.01 Da        Isoelectric Point: 10.0104

>NTDB_id=191482 A6L95_RS04890 WP_002248272.1 919333..920010(+) (pilH) [Neisseria meningitidis strain M25456]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=191482 A6L95_RS04890 WP_002248272.1 919333..920010(+) (pilH) [Neisseria meningitidis strain M25456]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.259

96

0.809

Multiple sequence alignment