Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L29_RS04490 Genome accession   NZ_CP016674
Coordinates   857251..857928 (+) Length   225 a.a.
NCBI ID   WP_002248272.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22160     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 852251..862928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L29_RS14705 - 853043..853150 (+) 108 Protein_841 IS5/IS1182 family transposase -
  A6L29_RS04470 (A6L29_04470) - 853195..853527 (+) 333 WP_002226445.1 hypothetical protein -
  A6L29_RS04475 (A6L29_04475) - 853859..854368 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L29_RS04480 (A6L29_04480) - 854940..855527 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L29_RS04485 (A6L29_04485) dnaB 855690..857096 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L29_RS04490 (A6L29_04490) pilH 857251..857928 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L29_RS04495 (A6L29_04495) pilV 857952..858563 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L29_RS04500 (A6L29_04500) pilJ 858560..859498 (+) 939 WP_065821467.1 PilW family protein Machinery gene
  A6L29_RS04505 (A6L29_04505) pilK 859477..860070 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L29_RS04510 (A6L29_04510) pilX 860075..860548 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25328.01 Da        Isoelectric Point: 10.0104

>NTDB_id=191338 A6L29_RS04490 WP_002248272.1 857251..857928(+) (pilH) [Neisseria meningitidis strain M22160]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=191338 A6L29_RS04490 WP_002248272.1 857251..857928(+) (pilH) [Neisseria meningitidis strain M22160]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.259

96

0.809

Multiple sequence alignment