Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   B9N48_RS06040 Genome accession   NZ_CP021169
Coordinates   1156332..1157249 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151332..1162249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS06025 trpS 1151912..1152904 (-) 993 WP_086344582.1 tryptophan--tRNA ligase -
  B9N48_RS06030 oppA 1153648..1155285 (+) 1638 WP_086343705.1 oligopeptide ABC transporter substrate-binding protein OppA -
  B9N48_RS06035 oppB 1155393..1156328 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  B9N48_RS06040 amiD 1156332..1157249 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  B9N48_RS06045 oppD 1157254..1158330 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  B9N48_RS06050 oppF 1158332..1159249 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  B9N48_RS06055 yjbB 1159357..1160574 (+) 1218 WP_086344583.1 MFS transporter -
  B9N48_RS06060 yjbC 1160738..1161316 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  B9N48_RS06065 spx 1161497..1161892 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=190747 B9N48_RS06040 WP_015252359.1 1156332..1157249(+) (amiD) [Bacillus subtilis strain TLO3]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=190747 B9N48_RS06040 WP_015252359.1 1156332..1157249(+) (amiD) [Bacillus subtilis strain TLO3]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCGATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364