Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B9N48_RS04325 Genome accession   NZ_CP021169
Coordinates   836811..838625 (+) Length   604 a.a.
NCBI ID   WP_042978122.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 831811..843625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS04310 glvR 832663..833427 (+) 765 WP_024571963.1 MurR/RpiR family transcriptional regulator GlvR -
  B9N48_RS04315 malP 833442..835025 (+) 1584 WP_086343587.1 PTS maltose transporter subunit IIBC -
  B9N48_RS04320 yfiB 835096..836817 (+) 1722 WP_086343588.1 ABC transporter ATP-binding protein -
  B9N48_RS04325 rcrQ 836811..838625 (+) 1815 WP_042978122.1 ABC transporter ATP-binding protein Regulator
  B9N48_RS04330 catD 838779..839183 (+) 405 WP_003244204.1 DoxX family oxidoreductase CatD -
  B9N48_RS04335 catE 839201..840058 (+) 858 WP_003233597.1 catechol 2,3-dioxygenase -
  B9N48_RS04340 - 840059..840430 (+) 372 Protein_799 Gfo/Idh/MocA family oxidoreductase -
  B9N48_RS04345 lnrJ 840557..841759 (+) 1203 WP_086343589.1 two-component system sensor histidine kinase LnrJ -
  B9N48_RS04350 lnrK 841756..842418 (+) 663 WP_015252530.1 two-component system response regulator LnrK -
  B9N48_RS04355 lnrL 842562..843497 (+) 936 WP_086343590.1 linearmycin resistance ATP-binding protein LnrL -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67411.21 Da        Isoelectric Point: 9.7027

>NTDB_id=190729 B9N48_RS04325 WP_042978122.1 836811..838625(+) (rcrQ) [Bacillus subtilis strain TLO3]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPNEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIRQKGFYSDLYESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=190729 B9N48_RS04325 WP_042978122.1 836811..838625(+) (rcrQ) [Bacillus subtilis strain TLO3]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGCGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAAAGAAAAGGACTGCTCATACTTGTCATGC
TAATGGTTGTCATCAGCGCCATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCCGTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCTCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATTGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGTTGGGACCATTGCAGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGCTTTACAATGATAGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGGGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCGGGGCAGTCCATCGCTTTTGTCGGACCG
ACGGGGGCCGGGAAGACAACCGTCACTAACCTTCTCGCCCGTTTTTACGAGCCTAACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCAAGCCTCAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTATGGCAGGCTCGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGCTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGCGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTAACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTAAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.483

96.026

0.379

Multiple sequence alignment