Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   CAH07_RS13075 Genome accession   NZ_CP021123
Coordinates   2544770..2545219 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SEM-9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539770..2550219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS13045 (CAH07_12885) sepM 2539849..2540874 (-) 1026 WP_003245451.1 protease DdcP Regulator
  CAH07_RS13050 (CAH07_12890) ylbK 2540876..2541658 (-) 783 WP_101172457.1 patatin family protein -
  CAH07_RS13055 (CAH07_12895) spoVV 2541839..2543065 (+) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  CAH07_RS13060 (CAH07_12900) coaD 2543076..2543561 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CAH07_RS13065 (CAH07_12905) rsmD 2543566..2544120 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CAH07_RS13070 (CAH07_12910) ylbG 2544443..2544715 (-) 273 WP_015715839.1 YlbG family protein -
  CAH07_RS13075 (CAH07_12915) ylbF 2544770..2545219 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CAH07_RS13080 (CAH07_12920) ylbE 2545335..2545574 (-) 240 WP_003232231.1 YlbE-like family protein -
  CAH07_RS13085 (CAH07_12925) ylbD 2545590..2545988 (-) 399 WP_003232233.1 YlbD family protein -
  CAH07_RS13090 (CAH07_12930) ylbC 2546220..2547260 (-) 1041 WP_015483195.1 CAP domain-containing protein -
  CAH07_RS13095 (CAH07_12935) ylbB 2547344..2547790 (-) 447 WP_003221362.1 CBS domain-containing protein -
  CAH07_RS13100 (CAH07_12940) ylbA 2547928..2548290 (+) 363 WP_003232238.1 YugN family protein -
  CAH07_RS13105 (CAH07_12945) ctaG 2548322..2549215 (-) 894 WP_029317760.1 cytochrome c oxidase assembly factor CtaG -
  CAH07_RS13110 (CAH07_12950) ctaF 2549243..2549575 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  CAH07_RS13115 (CAH07_12955) ctaE 2549578..2550201 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=190559 CAH07_RS13075 WP_003221370.1 2544770..2545219(-) (ylbF) [Bacillus subtilis strain SEM-9]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=190559 CAH07_RS13075 WP_003221370.1 2544770..2545219(-) (ylbF) [Bacillus subtilis strain SEM-9]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1