Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6L40_RS01050 Genome accession   NZ_CP016656
Coordinates   182746..183684 (-) Length   312 a.a.
NCBI ID   WP_065826083.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22769     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177746..188684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L40_RS01030 (A6L40_01030) dut 178614..179066 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6L40_RS01035 (A6L40_01035) - 179209..179637 (+) 429 Protein_201 AzlC family ABC transporter permease -
  A6L40_RS01040 (A6L40_01040) pilX 181696..182169 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L40_RS01045 (A6L40_01045) pilK 182174..182767 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L40_RS01050 (A6L40_01050) pilJ 182746..183684 (-) 939 WP_065826083.1 PilW family protein Machinery gene
  A6L40_RS01055 (A6L40_01055) pilV 183681..184292 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L40_RS01060 (A6L40_01060) pilH 184316..184993 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L40_RS01065 (A6L40_01065) dnaB 185148..186554 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L40_RS01070 (A6L40_01070) - 186717..187304 (+) 588 WP_002220670.1 superoxide dismutase -
  A6L40_RS01075 (A6L40_01075) - 187876..188385 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34446.11 Da        Isoelectric Point: 8.7230

>NTDB_id=190486 A6L40_RS01050 WP_065826083.1 182746..183684(-) (pilJ) [Neisseria meningitidis strain M22769]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIEYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=190486 A6L40_RS01050 WP_065826083.1 182746..183684(-) (pilJ) [Neisseria meningitidis strain M22769]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGAATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.063

100

0.811

Multiple sequence alignment