Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | A6L25_RS05220 | Genome accession | NZ_CP016652 |
| Coordinates | 1020766..1021704 (-) | Length | 312 a.a. |
| NCBI ID | WP_002248274.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain M08001 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 972954..1030381 | 1020766..1021704 | within | 0 |
Gene organization within MGE regions
Location: 972954..1030381
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6L25_RS04925 (A6L25_04925) | - | 972954..975179 (+) | 2226 | WP_002220751.1 | NADP-dependent isocitrate dehydrogenase | - |
| A6L25_RS13390 | - | 976347..976481 (+) | 135 | Protein_906 | IS110 family transposase | - |
| A6L25_RS04935 (A6L25_04935) | - | 976545..977552 (+) | 1008 | Protein_907 | IS5 family transposase | - |
| A6L25_RS04940 (A6L25_04940) | - | 977690..978658 (+) | 969 | Protein_908 | IS5 family transposase | - |
| A6L25_RS14420 (A6L25_04945) | - | 979062..979193 (+) | 132 | WP_002217434.1 | hypothetical protein | - |
| A6L25_RS04950 (A6L25_04950) | - | 979190..979558 (+) | 369 | WP_002220735.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| A6L25_RS13960 | - | 979574..979744 (+) | 171 | WP_164728559.1 | hypothetical protein | - |
| A6L25_RS04955 (A6L25_04955) | - | 979996..980487 (+) | 492 | WP_002217437.1 | DUF4760 domain-containing protein | - |
| A6L25_RS04960 (A6L25_04960) | - | 980846..981082 (+) | 237 | WP_002217439.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| A6L25_RS04965 (A6L25_04965) | - | 981084..981431 (+) | 348 | WP_002217440.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| A6L25_RS04970 (A6L25_04970) | - | 981484..981993 (-) | 510 | WP_002220734.1 | hypothetical protein | - |
| A6L25_RS04975 (A6L25_04975) | - | 982005..982478 (-) | 474 | WP_002220733.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| A6L25_RS04980 (A6L25_04980) | - | 982617..982892 (-) | 276 | WP_002217443.1 | hypothetical protein | - |
| A6L25_RS04985 (A6L25_04985) | - | 982889..983314 (-) | 426 | WP_002220721.1 | hypothetical protein | - |
| A6L25_RS04990 (A6L25_04990) | - | 983378..983749 (-) | 372 | WP_002220720.1 | hypothetical protein | - |
| A6L25_RS14500 | - | 983817..984023 (-) | 207 | WP_002217448.1 | hypothetical protein | - |
| A6L25_RS04995 (A6L25_04995) | - | 984040..984486 (-) | 447 | WP_002220718.1 | hypothetical protein | - |
| A6L25_RS05000 (A6L25_05000) | gpJ | 984557..988822 (-) | 4266 | WP_002220717.1 | TipJ family phage tail tip protein | - |
| A6L25_RS05005 (A6L25_05005) | - | 988958..989680 (-) | 723 | WP_002220716.1 | tail assembly protein | - |
| A6L25_RS05010 (A6L25_05010) | - | 989677..990432 (-) | 756 | WP_002244525.1 | C40 family peptidase | - |
| A6L25_RS05015 (A6L25_05015) | - | 990429..991151 (-) | 723 | WP_002217456.1 | phage minor tail protein L | - |
| A6L25_RS05020 (A6L25_05020) | - | 991211..991480 (-) | 270 | WP_002217457.1 | phage tail protein | - |
| A6L25_RS05025 (A6L25_05025) | - | 991502..994720 (-) | 3219 | WP_002224445.1 | phage tail length tape measure family protein | - |
| A6L25_RS05030 (A6L25_05030) | - | 994713..994985 (-) | 273 | WP_002220710.1 | DUF1799 domain-containing protein | - |
| A6L25_RS05035 (A6L25_05035) | - | 995033..995344 (-) | 312 | WP_002220709.1 | phage tail assembly chaperone | - |
| A6L25_RS05040 (A6L25_05040) | - | 995408..996049 (-) | 642 | WP_002220708.1 | phage tail protein | - |
| A6L25_RS05045 (A6L25_05045) | - | 996081..996500 (-) | 420 | WP_002244524.1 | hypothetical protein | - |
| A6L25_RS05050 (A6L25_05050) | - | 996481..996783 (-) | 303 | WP_002244523.1 | head-tail joining protein | - |
| A6L25_RS05055 (A6L25_05055) | - | 996776..997003 (-) | 228 | WP_002220705.1 | hypothetical protein | - |
| A6L25_RS05060 (A6L25_05060) | - | 997061..998953 (-) | 1893 | WP_002220704.1 | phage major capsid protein | - |
| A6L25_RS05065 (A6L25_05065) | - | 998934..1000496 (-) | 1563 | WP_002220703.1 | phage portal protein | - |
| A6L25_RS05070 (A6L25_05070) | - | 1000505..1000759 (-) | 255 | WP_002220702.1 | hypothetical protein | - |
| A6L25_RS05075 (A6L25_05075) | - | 1000746..1001132 (-) | 387 | WP_002220701.1 | DUF3310 domain-containing protein | - |
| A6L25_RS05080 (A6L25_05080) | - | 1001135..1001344 (-) | 210 | WP_002220700.1 | hypothetical protein | - |
| A6L25_RS05085 (A6L25_05085) | - | 1001361..1004207 (-) | 2847 | WP_002220699.1 | primase-helicase family protein | - |
| A6L25_RS05090 (A6L25_05090) | - | 1004322..1004669 (-) | 348 | WP_002220698.1 | hypothetical protein | - |
| A6L25_RS05095 (A6L25_05095) | - | 1005069..1005785 (+) | 717 | WP_002220696.1 | LexA family transcriptional regulator | - |
| A6L25_RS05100 (A6L25_05100) | - | 1005888..1006313 (+) | 426 | WP_002220695.1 | hypothetical protein | - |
| A6L25_RS05105 (A6L25_05105) | - | 1006544..1006744 (+) | 201 | WP_002219431.1 | hypothetical protein | - |
| A6L25_RS05110 (A6L25_05110) | - | 1006812..1007171 (+) | 360 | WP_002220694.1 | hypothetical protein | - |
| A6L25_RS05115 (A6L25_05115) | - | 1007196..1008050 (+) | 855 | WP_002220693.1 | YfdQ family protein | - |
| A6L25_RS05120 (A6L25_05120) | - | 1008123..1008338 (+) | 216 | WP_002220692.1 | hypothetical protein | - |
| A6L25_RS05125 (A6L25_05125) | - | 1008374..1008634 (+) | 261 | WP_002220690.1 | NGO1622 family putative holin | - |
| A6L25_RS05130 (A6L25_05130) | - | 1008631..1008924 (+) | 294 | WP_002220689.1 | hypothetical protein | - |
| A6L25_RS05135 (A6L25_05135) | - | 1008927..1009118 (+) | 192 | WP_002219435.1 | type ISP restriction/modification enzyme | - |
| A6L25_RS05140 (A6L25_05140) | - | 1009118..1009258 (+) | 141 | WP_002220688.1 | hypothetical protein | - |
| A6L25_RS05145 (A6L25_05145) | - | 1009255..1009464 (+) | 210 | WP_002220687.1 | hypothetical protein | - |
| A6L25_RS05150 (A6L25_05150) | - | 1009522..1010439 (-) | 918 | WP_002220686.1 | KilA-N domain-containing protein | - |
| A6L25_RS05155 (A6L25_05155) | - | 1011307..1011786 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| A6L25_RS05170 (A6L25_05170) | - | 1012222..1012602 (-) | 381 | WP_002220683.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| A6L25_RS05175 (A6L25_05175) | - | 1012757..1013953 (-) | 1197 | WP_002224447.1 | tyrosine-type recombinase/integrase | - |
| A6L25_RS05190 (A6L25_05190) | yaaA | 1014485..1015264 (-) | 780 | WP_002220681.1 | peroxide stress protein YaaA | - |
| A6L25_RS14605 | - | 1015313..1015438 (-) | 126 | Protein_957 | IS5/IS1182 family transposase | - |
| A6L25_RS05195 (A6L25_05195) | dapC | 1015526..1016713 (-) | 1188 | WP_002220680.1 | succinyldiaminopimelate transaminase | - |
| A6L25_RS05200 (A6L25_05200) | dut | 1016789..1017241 (-) | 453 | WP_002220679.1 | dUTP diphosphatase | - |
| A6L25_RS05205 (A6L25_05205) | - | 1017384..1017812 (+) | 429 | Protein_960 | AzlC family ABC transporter permease | - |
| A6L25_RS05210 (A6L25_05210) | pilX | 1019716..1020189 (-) | 474 | WP_002248276.1 | PilX family type IV pilin | Machinery gene |
| A6L25_RS05215 (A6L25_05215) | pilK | 1020194..1020787 (-) | 594 | WP_002248275.1 | pilus assembly PilX family protein | Machinery gene |
| A6L25_RS05220 (A6L25_05220) | pilJ | 1020766..1021704 (-) | 939 | WP_002248274.1 | PilW family protein | Machinery gene |
| A6L25_RS05225 (A6L25_05225) | pilV | 1021701..1022312 (-) | 612 | WP_002248273.1 | type IV pilus modification protein PilV | Machinery gene |
| A6L25_RS05230 (A6L25_05230) | pilH | 1022336..1023013 (-) | 678 | WP_002248272.1 | GspH/FimT family pseudopilin | Machinery gene |
| A6L25_RS05235 (A6L25_05235) | dnaB | 1023168..1024574 (-) | 1407 | WP_002248271.1 | replicative DNA helicase | - |
| A6L25_RS05240 (A6L25_05240) | - | 1024737..1025324 (+) | 588 | WP_002220670.1 | superoxide dismutase | - |
| A6L25_RS05245 (A6L25_05245) | - | 1025896..1026405 (-) | 510 | WP_002213852.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| A6L25_RS05250 (A6L25_05250) | - | 1026737..1027069 (-) | 333 | WP_002226445.1 | hypothetical protein | - |
| A6L25_RS14610 | - | 1027114..1027221 (-) | 108 | Protein_970 | IS5/IS1182 family transposase | - |
| A6L25_RS05255 (A6L25_05255) | cysT | 1027360..1028196 (+) | 837 | WP_002226446.1 | sulfate ABC transporter permease subunit CysT | - |
| A6L25_RS05260 (A6L25_05260) | cysW | 1028451..1029311 (+) | 861 | WP_002220668.1 | sulfate ABC transporter permease subunit CysW | - |
| A6L25_RS05265 (A6L25_05265) | - | 1029308..1030381 (+) | 1074 | WP_002220667.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 312 a.a. Molecular weight: 34374.05 Da Isoelectric Point: 8.9869
>NTDB_id=190309 A6L25_RS05220 WP_002248274.1 1020766..1021704(-) (pilJ) [Neisseria meningitidis strain M08001]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL
Nucleotide
Download Length: 939 bp
>NTDB_id=190309 A6L25_RS05220 WP_002248274.1 1020766..1021704(-) (pilJ) [Neisseria meningitidis strain M08001]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
80.063 |
100 |
0.811 |