Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6M06_RS07670 Genome accession   NZ_CP016651
Coordinates   1487194..1488132 (-) Length   312 a.a.
NCBI ID   WP_002248274.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25474     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482194..1493132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M06_RS07650 (A6M06_07650) dut 1483217..1483669 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6M06_RS07655 (A6M06_07655) - 1483812..1484240 (+) 429 Protein_1415 AzlC family ABC transporter permease -
  A6M06_RS07660 (A6M06_07660) pilX 1486144..1486617 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6M06_RS07665 (A6M06_07665) pilK 1486622..1487215 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6M06_RS07670 (A6M06_07670) pilJ 1487194..1488132 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6M06_RS07675 (A6M06_07675) pilV 1488129..1488740 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6M06_RS07680 (A6M06_07680) pilH 1488764..1489441 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6M06_RS07685 (A6M06_07685) dnaB 1489596..1491002 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6M06_RS07690 (A6M06_07690) - 1491165..1491752 (+) 588 WP_002220670.1 superoxide dismutase -
  A6M06_RS07695 (A6M06_07695) - 1492250..1492759 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34374.05 Da        Isoelectric Point: 8.9869

>NTDB_id=190276 A6M06_RS07670 WP_002248274.1 1487194..1488132(-) (pilJ) [Neisseria meningitidis strain M25474]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=190276 A6M06_RS07670 WP_002248274.1 1487194..1488132(-) (pilJ) [Neisseria meningitidis strain M25474]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.063

100

0.811

Multiple sequence alignment