Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   A6A11_RS01960 Genome accession   NZ_CP016605
Coordinates   396501..396800 (+) Length   99 a.a.
NCBI ID   WP_418883947.1    Uniprot ID   -
Organism   Bisgaardia hudsonensis strain M327/99/2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391501..401800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6A11_RS01915 (A6A11_01880) tolB 392070..393377 (+) 1308 WP_132021441.1 Tol-Pal system beta propeller repeat protein TolB -
  A6A11_RS01920 (A6A11_01885) pal 393387..393848 (+) 462 WP_132021468.1 peptidoglycan-associated lipoprotein Pal -
  A6A11_RS01945 (A6A11_01910) - 394562..395089 (+) 528 WP_132021470.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  A6A11_RS01950 (A6A11_01915) - 395086..395829 (+) 744 WP_132021472.1 hypothetical protein -
  A6A11_RS01955 (A6A11_01920) - 395816..396514 (+) 699 WP_165906452.1 DUF2572 family protein -
  A6A11_RS01960 (A6A11_01925) comQ 396501..396800 (+) 300 WP_418883947.1 DUF5374 domain-containing protein Machinery gene
  A6A11_RS01965 (A6A11_01930) recC 396837..400295 (+) 3459 WP_132021476.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11667.70 Da        Isoelectric Point: 10.2109

>NTDB_id=189598 A6A11_RS01960 WP_418883947.1 396501..396800(+) (comQ) [Bisgaardia hudsonensis strain M327/99/2]
MMNYNVSKYKGMSLLSLLMTLSLFSGIFLSINQWTSYQRKSAVEIYQHYQALQIAENQKQRLFLKLACQHRIIQNDLTFT
IQCANKKVKVQYLNREVSL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=189598 A6A11_RS01960 WP_418883947.1 396501..396800(+) (comQ) [Bisgaardia hudsonensis strain M327/99/2]
ATGATGAATTATAACGTATCCAAATATAAAGGAATGAGTTTATTGAGTTTACTAATGACTTTAAGTCTATTTAGTGGTAT
TTTTTTGTCTATTAATCAGTGGACAAGTTATCAACGAAAAAGTGCGGTTGAAATTTATCAACATTATCAAGCATTACAGA
TTGCAGAAAATCAAAAACAACGATTATTTTTAAAATTAGCTTGTCAGCATCGTATAATACAAAATGATTTAACTTTTACT
ATTCAATGTGCTAATAAAAAGGTAAAAGTACAATATCTTAATCGAGAGGTAAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(60-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88.889

0.505

Multiple sequence alignment