Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   BCY75_RS02280 Genome accession   NZ_CP016602
Coordinates   479396..479953 (+) Length   185 a.a.
NCBI ID   WP_065825221.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WiKim52     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 474396..484953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCY75_RS02255 (BCY75_02255) - 474445..475557 (+) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -
  BCY75_RS02260 (BCY75_02260) cysS 476099..477505 (+) 1407 WP_065825219.1 cysteine--tRNA ligase -
  BCY75_RS02265 (BCY75_02265) - 477502..477909 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  BCY75_RS02270 (BCY75_02270) rlmB 477896..478783 (+) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BCY75_RS02275 (BCY75_02275) - 478787..479320 (+) 534 WP_065825220.1 NYN domain-containing protein -
  BCY75_RS02280 (BCY75_02280) sigH 479396..479953 (+) 558 WP_065825221.1 sigma-70 family RNA polymerase sigma factor Regulator
  BCY75_RS02285 (BCY75_02285) - 480233..480550 (+) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  BCY75_RS02290 (BCY75_02290) - 480657..481016 (+) 360 WP_004265057.1 YccF domain-containing protein -
  BCY75_RS02295 (BCY75_02295) - 481167..483110 (-) 1944 WP_065825915.1 ABC-F family ATP-binding cassette domain-containing protein -
  BCY75_RS02300 (BCY75_02300) - 483306..483953 (+) 648 WP_065825222.1 redox-sensing transcriptional repressor Rex -
  BCY75_RS02305 (BCY75_02305) - 484006..484638 (-) 633 WP_004265005.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21766.97 Da        Isoelectric Point: 6.6648

>NTDB_id=189547 BCY75_RS02280 WP_065825221.1 479396..479953(+) (sigH) [Latilactobacillus curvatus strain WiKim52]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRIDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=189547 BCY75_RS02280 WP_065825221.1 479396..479953(+) (sigH) [Latilactobacillus curvatus strain WiKim52]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGATCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment