Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BCM43_RS06950 Genome accession   NZ_CP016588
Coordinates   1342681..1345017 (+) Length   778 a.a.
NCBI ID   WP_053512761.1    Uniprot ID   A0A9X6KDD7
Organism   Bacillus thuringiensis strain KNU-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337681..1350017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM43_RS06930 (BCM43_06930) - 1339087..1339503 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  BCM43_RS06935 (BCM43_06935) - 1339539..1340684 (+) 1146 WP_000439892.1 cysteine desulfurase family protein -
  BCM43_RS06940 (BCM43_06940) mnmA 1340701..1341816 (+) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  BCM43_RS06945 (BCM43_06945) - 1341926..1342585 (+) 660 WP_000066409.1 tetratricopeptide repeat protein -
  BCM43_RS06950 (BCM43_06950) recD2 1342681..1345017 (+) 2337 WP_053512761.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BCM43_RS06955 (BCM43_06955) - 1345147..1345335 (+) 189 WP_000469281.1 hypothetical protein -
  BCM43_RS06960 (BCM43_06960) - 1345354..1345482 (+) 129 WP_001053553.1 YrzQ family protein -
  BCM43_RS06965 (BCM43_06965) - 1345529..1345741 (-) 213 WP_000242535.1 hypothetical protein -
  BCM43_RS06970 (BCM43_06970) - 1345918..1346985 (+) 1068 WP_000793128.1 AI-2E family transporter -
  BCM43_RS06975 (BCM43_06975) - 1347030..1347374 (-) 345 WP_000209584.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87418.91 Da        Isoelectric Point: 5.2601

>NTDB_id=189415 BCM43_RS06950 WP_053512761.1 1342681..1345017(+) (recD2) [Bacillus thuringiensis strain KNU-07]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQEAQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=189415 BCM43_RS06950 WP_053512761.1 1342681..1345017(+) (recD2) [Bacillus thuringiensis strain KNU-07]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGCGCAGGATGTTTTTACACATTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACGTTATTCTACTCTGAGAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACGTTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCATCACTACACGGGTTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
ACTTGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGTTGCCGACGAACATTCAAGTTATCGTTGTAGGTGAC
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACTCTACCACCAG
ATTTAGCACAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGT
GAAAATGCTAAAACAAAAGGCTTTAGCGCAAGAGATGTACAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTGAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATTGGGGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGACGGAATTGAGGTAACGTATAC
GAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCAATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGAGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACCTTAGC
TAGTCGCTTGCAAGAAGCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment