Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BA953_RS08460 Genome accession   NZ_CP016556
Coordinates   1880332..1881036 (-) Length   234 a.a.
NCBI ID   WP_065740893.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875332..1886036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS08440 (BA953_08440) recG 1875947..1878025 (+) 2079 WP_065740891.1 ATP-dependent DNA helicase RecG -
  BA953_RS08445 (BA953_08445) cysQ 1878117..1878944 (-) 828 WP_019276594.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BA953_RS08450 (BA953_08450) nudE 1878971..1879519 (-) 549 WP_006957191.1 ADP compounds hydrolase NudE -
  BA953_RS08455 (BA953_08455) nfuA 1879651..1880238 (-) 588 WP_065740892.1 Fe-S biogenesis protein NfuA -
  BA953_RS08460 (BA953_08460) comF 1880332..1881036 (-) 705 WP_065740893.1 phosphoribosyltransferase family protein Machinery gene
  BA953_RS08465 (BA953_08465) bioH 1881095..1881892 (+) 798 WP_065740894.1 pimeloyl-ACP methyl ester esterase BioH -
  BA953_RS08470 (BA953_08470) - 1882002..1882472 (+) 471 WP_006957199.1 hypothetical protein -
  BA953_RS08475 (BA953_08475) - 1882545..1884872 (-) 2328 WP_065740895.1 Tex family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27230.77 Da        Isoelectric Point: 8.4348

>NTDB_id=189153 BA953_RS08460 WP_065740893.1 1880332..1881036(-) (comF) [Vibrio coralliilyticus strain 58]
MLTDWIKKHTAYLLPSHCDLCQMAIGSQAAHPLFCCFCLRRFAPVPRCRRCGLVTPEYVEMCGECLVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVPRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELDVPCEALFMKKR
ATERQQGMDKKQRKENVRQAFHLRKSINFEHVAIVDDVLTTGSTVHQLCELLLDAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=189153 BA953_RS08460 WP_065740893.1 1880332..1881036(-) (comF) [Vibrio coralliilyticus strain 58]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGCGATCGGGTC
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGCGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCCCTGAGTACGTCGAAATGTGTGGGGAATGTTTAGTTGCCCCGCCATTGTGGACACACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGGCTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTACCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGTGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGCCGAGAACTGGATGTGCCTTGTGAGGCTCTATTTATGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGCGTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATTTCGAGCATGTCGCTATTGTCGATGATGTGCTAACTACAGGCAGTACCGTGCATCAATTATGTGAATTATTGCTTG
ATGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

51.293

99.145

0.509
  comF Vibrio campbellii strain DS40M4

46.053

97.436

0.449

Multiple sequence alignment