Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BCM40_RS06925 Genome accession   NZ_CP016543
Coordinates   1386940..1389357 (+) Length   805 a.a.
NCBI ID   WP_065526572.1    Uniprot ID   A0A1C7EIR6
Organism   Planococcus donghaensis strain DSM 22276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1381940..1394357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM40_RS06905 (BCM40_09315) cymR 1383548..1383964 (+) 417 WP_065526576.1 cysteine metabolism transcriptional regulator CymR -
  BCM40_RS06910 (BCM40_09310) - 1383979..1385112 (+) 1134 WP_065526575.1 cysteine desulfurase family protein -
  BCM40_RS06915 (BCM40_09305) mnmA 1385126..1386241 (+) 1116 WP_065526574.1 tRNA 2-thiouridine(34) synthase MnmA -
  BCM40_RS06920 (BCM40_09300) - 1386256..1386915 (+) 660 WP_197681402.1 tetratricopeptide repeat protein -
  BCM40_RS06925 (BCM40_09295) recD2 1386940..1389357 (+) 2418 WP_065526572.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BCM40_RS06930 (BCM40_09290) alaS 1389943..1392567 (+) 2625 WP_065526571.1 alanine--tRNA ligase -
  BCM40_RS06935 (BCM40_09285) - 1392657..1392923 (+) 267 WP_038705389.1 IreB family regulatory phosphoprotein -
  BCM40_RS06940 (BCM40_09280) ruvX 1392926..1393342 (+) 417 WP_008431553.1 Holliday junction resolvase RuvX -
  BCM40_RS06945 (BCM40_09275) - 1393356..1393667 (+) 312 WP_065526570.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89959.09 Da        Isoelectric Point: 4.9671

>NTDB_id=189067 BCM40_RS06925 WP_065526572.1 1386940..1389357(+) (recD2) [Planococcus donghaensis strain DSM 22276]
MTGQIDLFQEEKQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTPYTEKEIIVSGYFPMLTLEEQYRFTGVVKNHPRYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGQKTAETIVKKLGKDAIKKILEDPDSLDKVPRLSDEKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQIGMRIYQAYREETIDILTKNPFQLIEEIEGIGFQRADELGMKLGITGSHPDRIKASILHILNQAS
LSDGHVYVDAKTLIPMVKEMLEARQQAEIPVEAISKAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLLLEQESR
AKFPSSEVRKALGEAEERLGVNYAETQIDAIESSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKQEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKNGQLPEDITAKTSDRSFIKAGADQIPMVVEK
VVKSALSKGHSIRDIQVLAPMYKGPAGIDALNRLIQEMVNPNPDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPIVRGYMKMLRRNLLYTGITRS
KDFLVLCGDPGAFRYGVERTDDTQRMTTLQSRLAITTEEPKTEQQTKQQEETKQSGPVSLTTENAHSIHPMIGMEGITPQ
KFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=189067 BCM40_RS06925 WP_065526572.1 1386940..1389357(+) (recD2) [Planococcus donghaensis strain DSM 22276]
ATGACCGGACAAATCGATTTATTTCAAGAAGAAAAACAATTTGTATTAGGGCGTCCTGTCGTCTCAATTTTTCATAATCC
TCAAAATTTATTCTCCATCGCGAAAGTGAAAATCCAAGAAACCAATACCCCTTACACCGAGAAAGAAATCATTGTTTCTG
GTTATTTCCCCATGTTGACTCTTGAAGAGCAATATCGTTTTACCGGCGTGGTAAAAAATCACCCGCGTTACGGTGTTCAA
TTTCAAGTAGAAACATTTACTAAAGAAGTGCCTGAAACCGAACAAGGCATTATTCATTATTTATCGAGTGACATGTTTAA
TGGCATCGGCCAGAAAACTGCTGAAACCATTGTTAAAAAGTTGGGTAAAGATGCTATCAAAAAGATTTTAGAAGACCCAG
ATTCCTTAGACAAAGTTCCGCGGTTATCCGATGAAAAAAAAGATACGATTCGTGCCACGCTTCAAATGAATTTAGGCCTT
GAACGCGTCATGATTCAATTAAACGACTGGGGCTTTGGTCCACAAATCGGCATGCGTATTTATCAAGCGTACCGTGAAGA
AACAATTGATATTTTGACAAAAAACCCATTTCAATTGATTGAAGAAATTGAAGGAATAGGGTTTCAGCGTGCTGACGAAC
TCGGGATGAAACTAGGCATTACAGGAAGTCACCCGGACCGCATCAAGGCATCTATTTTACATATCCTTAACCAAGCTTCG
TTATCGGATGGACATGTCTATGTTGATGCCAAAACGTTGATCCCAATGGTCAAAGAAATGCTTGAAGCACGTCAACAAGC
AGAAATTCCGGTTGAAGCCATTTCGAAAGCCGCAATCGAACTAAATGAAGAAGGCAAAGTGGCTGGAGAAGAAACCCGGC
TTTATTTGCCATCGCTCTATTATTCAGAAGTGGGCATCGCGACAAAATTAGAAACCTTATTATTAGAACAAGAATCACGT
GCGAAATTCCCGAGTTCTGAAGTTCGAAAAGCGCTCGGTGAAGCAGAAGAGCGACTAGGGGTTAATTATGCTGAGACGCA
AATTGACGCGATCGAAAGTAGCATCAATTCATCGGTCATGATTCTTACAGGGGGACCGGGTACGGGCAAAACGACCGTCG
TTCGCGGACTTGTAGAAATTTATGCCGAACTGCACGGATTGTCACTAGATCCAAAAGAATACGCCAAAAAACAAGAACCA
TTTCCAATTATTCTCGCAGCTCCAACAGGACGTGCGGCAAAGCGTTTGAGTGAATCAACTGAACTGCCAGCCATGACGAT
TCATCGTTTACTCGGTTTTAATGGCCAAGAAAAAGACGAAGAAACCGAAAAAGAAATCGAAGGCAAATTGATCATTATCG
ATGAAATGTCAATGGTCGATACATGGCTGGCACATCAATTGCTAAAAGCTGTGCCAGAAGATGCGCAATTGATTTTTGTT
GGCGACCAAGATCAACTGCCACCAGTAGGACCAGGACAAGTATTGCGTGATTTACTCGAATCAAAACGGATACCCACAGT
CGAATTGACCGATATCTACCGACAATCTTCAGGTTCATCCATCATAGAACTCGCGCACCAAATGAAAAACGGCCAATTGC
CAGAAGACATCACAGCGAAAACGTCAGACCGTTCTTTTATCAAAGCTGGCGCTGACCAAATTCCTATGGTTGTTGAAAAA
GTTGTGAAAAGTGCATTATCCAAAGGGCATTCAATCAGAGACATTCAAGTGCTCGCCCCGATGTACAAAGGACCTGCAGG
AATTGACGCCTTAAACCGACTGATTCAAGAAATGGTCAACCCAAATCCAGACGGCAAACGAAAAGAGTTAGTATTTGGGG
ACATTACTTATCGTATTGGCGATAAAATATTACAGCTTGTCAACCAACCCGAAAGCAATGTTTTTAACGGCGATATGGGC
GAAGTTGTCGCCATCATGAAAGCAAAAGAAACAGTCGAAAAACAAGACATGTTGGTCGCTTCTTTTGACGGCATCGAAGT
CACATATGAACGCAGCGATTTAAACCAATTAACATTAGCGTATTGTTGTTCGATCCATAAATCGCAAGGCTCGGAATTTC
CAACCGTAATTATGCCAATTGTTCGAGGTTATATGAAAATGCTGCGCCGCAATTTACTTTATACTGGTATCACGCGAAGC
AAAGACTTTCTCGTGCTGTGCGGGGACCCAGGGGCATTCCGCTACGGTGTCGAGCGGACAGACGACACGCAGCGCATGAC
CACCTTGCAAAGCCGTCTAGCAATCACTACTGAAGAACCCAAAACCGAACAGCAAACAAAACAACAAGAAGAAACAAAAC
AAAGCGGACCGGTGAGCCTAACAACCGAAAACGCCCACTCGATCCACCCAATGATCGGCATGGAAGGCATTACTCCGCAA
AAATTCATGGAAGCTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7EIR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.764

99.13

0.553

Multiple sequence alignment