Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I858_RS07135 Genome accession   NZ_CP016540
Coordinates   1408897..1411314 (+) Length   805 a.a.
NCBI ID   WP_065524185.1    Uniprot ID   A0A1B1RXE3
Organism   Planococcus versutus strain L10.15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403897..1416314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS07110 (I858_000755) - 1403913..1405202 (-) 1290 WP_065524190.1 replication-associated recombination protein A -
  I858_RS07115 (I858_000750) cymR 1405504..1405920 (+) 417 WP_065524189.1 cysteine metabolism transcriptional regulator CymR -
  I858_RS07120 (I858_000745) - 1405935..1407068 (+) 1134 WP_065524188.1 cysteine desulfurase family protein -
  I858_RS07125 (I858_000740) mnmA 1407082..1408197 (+) 1116 WP_065524187.1 tRNA 2-thiouridine(34) synthase MnmA -
  I858_RS07130 (I858_000735) - 1408213..1408872 (+) 660 WP_065524186.1 tetratricopeptide repeat protein -
  I858_RS07135 (I858_000730) recD2 1408897..1411314 (+) 2418 WP_065524185.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I858_RS07140 (I858_000725) alaS 1411839..1414463 (+) 2625 WP_065524184.1 alanine--tRNA ligase -
  I858_RS07145 (I858_000720) - 1414553..1414819 (+) 267 WP_006828732.1 IreB family regulatory phosphoprotein -
  I858_RS07150 (I858_000715) ruvX 1414822..1415238 (+) 417 WP_065524183.1 Holliday junction resolvase RuvX -
  I858_RS07155 (I858_000710) - 1415252..1415560 (+) 309 WP_065524182.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89741.89 Da        Isoelectric Point: 5.0861

>NTDB_id=189029 I858_RS07135 WP_065524185.1 1408897..1411314(+) (recD2) [Planococcus versutus strain L10.15]
MTGQIDLFQEEKQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTPYTEKEIIVSGYFPALTLEEQYRFTGVVKNHPRYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPDSLDKVPRLSADKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDILTKNPFQLIEEIEGIGFQRADELGMKLGITGSHPDRIKASILHILNQAS
LSDGHVFVDAQTLIPVVKEMLEARQQEEISIDAISKAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLLAEQENR
AKFPSSEVRKALGEAEERLGVNYAETQVEAIENSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKKGQLPEDITAKTADRSFIKAGIDQIPTVVEK
VVKSALSKGHSIKDIQVLAPMYKGPAGIDALNRLIQELVNSNPDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAIMRAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPIVRGYMKMLRRNLLYTGITRS
KDFLILCGDPGVFRYGVERTDDAQRMTTLKSRLAVATDEPKTEEQTKQLAQTKQSGPISLTVENVHTVHPMIGMEGITPQ
NFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=189029 I858_RS07135 WP_065524185.1 1408897..1411314(+) (recD2) [Planococcus versutus strain L10.15]
ATGACCGGACAAATCGATTTATTTCAAGAAGAAAAGCAATTTGTATTAGGGCGTCCTGTCGTCTCGATTTTTCACAATCC
CCAAAACTTATTCTCCATAGCCAAAGTGAAAATCCAAGAAACCAACACCCCTTATACTGAAAAAGAAATTATTGTATCTG
GCTATTTTCCGGCGTTGACGCTTGAAGAACAGTACCGTTTTACAGGAGTCGTAAAAAATCATCCGCGTTACGGCGTTCAA
TTTCAAGTGGAAACTTTTACAAAAGAAGTACCTGAAACCGAACAAGGCATCATTCATTATTTATCAAGTGATATGTTTAA
CGGCATTGGCCGGAAAACGGCGGAAACTATCGTTAAAAAACTAGGCAAAGACGCGATCAAAAAGATTTTAGAAGACCCTG
ATTCACTCGATAAAGTTCCGAGGTTATCTGCTGACAAAAAAGACACAATTCGCGCAACTTTACAAATGAACCTAGGTCTT
GAACGCGTAATGATTCAACTAAATGATTGGGGCTTTGGTCCACAAGTTGGCATGCGTATTTATCAAGCATACCGTGAAGA
AACTATCGACATTTTGACCAAAAATCCATTTCAGCTTATTGAAGAAATCGAAGGAATTGGTTTTCAACGTGCCGATGAAT
TAGGGATGAAACTCGGCATTACGGGTAGTCACCCTGACCGCATCAAAGCCTCGATTTTGCATATTCTCAATCAAGCTTCT
TTGTCTGATGGACACGTGTTTGTAGATGCCCAAACGTTAATTCCAGTAGTTAAAGAAATGCTTGAAGCACGGCAACAAGA
AGAAATTTCAATTGATGCGATTTCAAAAGCGGCAATTGAATTAAATGAAGAAGGCAAAGTGGCTGGAGAAGAAACACGGC
TCTACTTGCCATCACTTTATTATTCGGAAGTGGGCATTGCGACAAAATTAGAAACATTGCTGGCTGAACAAGAAAATCGC
GCAAAATTTCCGAGTTCAGAAGTGCGAAAAGCACTTGGCGAAGCTGAAGAACGTCTTGGAGTAAATTATGCTGAGACGCA
AGTTGAAGCAATCGAAAATAGCATTAACTCATCTGTTATGATTTTAACAGGAGGACCAGGTACTGGGAAAACAACCGTTG
TTCGTGGACTTGTAGAAATTTACGCCGAGCTTCACGGATTATCACTCGACCCTAAAGAATACGCAAAGAAAAAAGAACCT
TTTCCGATTATTCTTGCAGCACCAACTGGACGGGCGGCTAAACGGTTGAGTGAATCTACTGATTTGCCAGCTATGACCAT
TCACCGTTTGCTTGGATTTAATGGTCAAGAAAAAGACGAAGAAACAGAAAAAGAAATTGAAGGCAAATTGATTATTATCG
ATGAAATGTCGATGGTTGATACGTGGCTCGCACATCAATTGTTAAAAGCTGTACCGGAAGACGCCCAATTGATTTTTGTT
GGCGACCAAGATCAATTGCCGCCAGTCGGACCTGGTCAAGTATTGCGCGATTTACTAGAATCAAAACGAATTCCAACTGT
TGAATTAACGGATATTTATCGACAGTCGTCAGGCTCATCAATTATCGAACTGGCACATCAAATGAAAAAAGGGCAATTGC
CAGAAGACATTACCGCAAAAACAGCGGATCGTTCTTTCATTAAAGCAGGTATAGACCAGATTCCGACAGTAGTTGAAAAA
GTAGTTAAAAGCGCTTTATCAAAAGGTCATTCGATAAAAGATATTCAAGTACTAGCACCCATGTACAAAGGACCAGCAGG
AATTGACGCTTTAAATCGATTGATCCAAGAATTGGTCAATTCAAATCCTGACGGCAAACGTAAAGAACTGGTATTTGGCG
ATATTACATATCGCATTGGTGATAAAATTTTGCAACTGGTCAACCAGCCTGAAAGCAATGTCTTTAACGGAGATATGGGC
GAAGTTGTGGCTATTATGCGAGCAAAAGAAACCGTCGAAAAGCAAGATATGTTAGTCGCTTCATTTGATGGAATTGAAGT
AACTTATGAACGCAGCGACTTAAACCAATTAACGTTAGCGTATTGCTGCTCGATTCACAAATCACAAGGCTCTGAATTTC
CAACTGTCATCATGCCAATTGTGCGTGGCTACATGAAAATGCTACGTCGCAATTTACTATACACGGGCATCACGCGAAGT
AAAGATTTTCTCATTTTATGCGGCGACCCAGGTGTTTTTCGTTATGGTGTCGAACGTACAGACGACGCGCAACGCATGAC
TACATTGAAAAGTCGCTTAGCGGTCGCGACTGACGAACCAAAAACCGAAGAACAAACAAAACAACTTGCACAGACAAAAC
AAAGCGGACCTATTAGCCTAACCGTTGAAAACGTTCACACTGTTCACCCAATGATCGGTATGGAAGGCATCACGCCACAA
AATTTTATGGAAGCATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1RXE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.764

99.13

0.553

Multiple sequence alignment